Merge pull request #704 from mvdbeek/update_all_21_3_24

Update trusted tools
galaxyproject · Mar 22, 2024 · bc6c773 · bc6c773
2 parents e8a0e81 + faa552e
commit bc6c773
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diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock
@@ -62,6 +62,7 @@ tools:
   - 94170eee0ad8
   - cf13a1e03e5b
   - e4bd1e99bacf
+  - ea8146ee148f
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: exonerate
@@ -232,6 +233,7 @@ tools:
   - ac8250086ac3
   - ba6f87115e13
   - c2656b729ee9
+  - d03af1c7002c
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: tb_variant_filter
@@ -264,6 +266,7 @@ tools:
   owner: iuc
   revisions:
   - 012171ba9fce
+  - 42b38f6d9f68
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: find_nested_alt_orfs
@@ -324,6 +327,7 @@ tools:
   revisions:
   - 1563b58905f4
   - 554aa2a63f04
+  - fa7086274673
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: freyja_demix
@@ -369,6 +373,7 @@ tools:
   owner: iuc
   revisions:
   - 18a46265455b
+  - db57bc3b57af
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: funannotate_compare
@@ -416,6 +421,7 @@ tools:
   owner: bgruening
   revisions:
   - 8e9e228c54c4
+  - 1ac12c0cc7a0
   tool_panel_section_id: annotation
   tool_panel_section_label: Annotation
 - name: mitos2

diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock
@@ -88,6 +88,7 @@ tools:
   - 8b6d0d85252b
   - 8dee0218ac7d
   - a7b889b90140
+  - b799a615995d
   tool_panel_section_id: assembly
   tool_panel_section_label: Assembly
 - name: pilon

diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock
@@ -9,6 +9,7 @@ tools:
   - 359e043a285c
   - b226e0c805a5
   - f5792425ea50
+  - 27673f5b5343
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: tabular_to_fasta
@@ -168,6 +169,7 @@ tools:
   - 8190f6083c0d
   - e34bdac5b157
   - f5c632894818
+  - 705821bf30d2
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: gffread
@@ -190,6 +192,7 @@ tools:
   revisions:
   - 39881709807e
   - 8dbc700cb940
+  - 391a19477a12
   tool_panel_section_id: convert_formats
   tool_panel_section_label: Convert Formats
 - name: msconvert

diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock
@@ -104,6 +104,7 @@ tools:
   owner: iuc
   revisions:
   - 5c8a23ccb14a
+  - 84cc0dc92b0c
   tool_panel_section_id: data_managers
   tool_panel_section_label: Data Managers
 - name: data_manager_mapseq

diff --git a/usegalaxy.org/fasta_fastq.yml.lock b/usegalaxy.org/fasta_fastq.yml.lock
@@ -41,6 +41,7 @@ tools:
   - 1d8fe9bc4cb0
   - 65b93b623c77
   - dbf9c561ef29
+  - c59d48774d03
   tool_panel_section_id: fasta_fastq
   tool_panel_section_label: FASTA/FASTQ
 - name: fastx_trimmer

diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock
@@ -22,6 +22,7 @@ tools:
   - e08a7ad4378b
   - e407b9da183a
   - f5ea3ce9b9b0
+  - 1ec814014652
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data
 - name: ncbi_datasets
@@ -36,6 +37,7 @@ tools:
   - a3395b1d871b
   - b2ae7186d41f
   - c47a0a93ffd2
+  - 198c75abbf55
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data
 - name: ebi_metagenomics_run_downloader
@@ -70,6 +72,7 @@ tools:
   - 34758ab8aaa4
   - 7863f1abcdda
   - 9aaa46d45472
+  - 21a560af5913
   tool_panel_section_id: get_data
   tool_panel_section_label: Get Data
 - name: ega_download_client

diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock
@@ -69,6 +69,7 @@ tools:
   - 53460afd5115
   - '566197475670'
   - ca7cb0eaad62
+  - 374e9062d874
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: circos
@@ -288,6 +289,7 @@ tools:
   - 7dd841a32245
   - a1abfa420d9d
   - eca03db4f612
+  - 36b848d5f3ec
   tool_panel_section_id: graph_display_data
   tool_panel_section_label: Graph/Display Data
 - name: tsne

diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock
@@ -11,6 +11,7 @@ tools:
   - d8b6f0adaa79
   - f9b72a376ec9
   - fb4975b507c6
+  - 8a7462c0ac14
   tool_panel_section_id: mapping
   tool_panel_section_label: Mapping
 - name: bowtie2
@@ -22,6 +23,7 @@ tools:
   - 749c918495f7
   - c3dd1aeb7d07
   - f6877ad76b00
+  - 0d4acadabb04
   tool_panel_section_id: mapping
   tool_panel_section_label: Mapping
 - name: lastz
@@ -99,6 +101,7 @@ tools:
   - be1d967337e4
   - c0c2d0941de8
   - f54f5baedfdd
+  - 92678fcb1a5f
   tool_panel_section_id: mapping
   tool_panel_section_label: Mapping
 - name: rna_starsolo

diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock
@@ -33,32 +33,37 @@ tools:
   owner: iuc
   revisions:
   - b0d5976540e3
+  - af1211ed6c8e
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: vegan_fisher_alpha
   owner: iuc
   revisions:
   - f9966e11885b
+  - 0148e5cf20b2
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: vegan_diversity
   owner: iuc
   revisions:
   - a2c047a2c380
+  - a1b80a746054
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: kraken_report
   owner: devteam
   revisions:
   - 1902d3de4a4f
   - 6c09bed3444f
+  - 1c677354ab18
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: kraken
   owner: devteam
   revisions:
   - 8ba2174315aa
   - aec58624706f
+  - 766d5f63b0f4
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: taxonomy_krona_chart
@@ -84,6 +89,7 @@ tools:
   revisions:
   - 27d65c78863c
   - b11b3ac48bb9
+  - bfae8da6082c
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: biom_add_metadata
@@ -97,6 +103,7 @@ tools:
   - a3b86937ead6
   - dad9da48a09a
   - e3cbd2287f63
+  - ab9350a8ab4d
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: biom_convert
@@ -111,6 +118,7 @@ tools:
   - a4db66553a61
   - bd46669113b9
   - e177a8ea0bf1
+  - d4d4e9febf5c
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: kraken_translate
@@ -119,13 +127,15 @@ tools:
   - 9a5be5b1a5c9
   - 9bdcba262627
   - bc3e90fd13be
+  - 8cebdc74a48f
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: kraken_filter
   owner: devteam
   revisions:
   - 3d6570bffdb1
   - 5bee9adae474
+  - 67236d921e83
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: kraken2tax
@@ -378,13 +388,15 @@ tools:
   revisions:
   - 280386b252a5
   - 45210df786b9
+  - cef64c36c89e
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: plasflow
   owner: iuc
   revisions:
   - bda6012394f7
   - ea270d0ad0e6
+  - 1d2a91ab28b7
   tool_panel_section_id: metagenomic_analysis
   tool_panel_section_label: Metagenomic Analysis
 - name: valet

diff --git a/usegalaxy.org/multiple_alignments.yml.lock b/usegalaxy.org/multiple_alignments.yml.lock
@@ -36,6 +36,7 @@ tools:
   - aaefa93c2dd2
   - c5908940967d
   - f1a5908ea2cb
+  - bf28a8cff401
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: clustalw
@@ -60,6 +61,7 @@ tools:
   - abe34706eddf
   - b3acbb3a6af0
   - fbca557a4847
+  - e8fdceffea4c
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_mummer
@@ -69,6 +71,7 @@ tools:
   - 48badcd29c5d
   - bcd65de9725b
   - fc143c06a842
+  - 57f042937ba7
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_dnadiff
@@ -78,6 +81,7 @@ tools:
   - 60698466facd
   - c9685bc0407c
   - deacc6b40cc0
+  - 5561a1193611
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_show_coords
@@ -87,6 +91,7 @@ tools:
   - b4124df98b26
   - b8e2c2f95d26
   - f8734af48332
+  - cf3c9489c088
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_mummerplot
@@ -96,6 +101,7 @@ tools:
   - c0cedc12fcc5
   - e8c60daa41e0
   - ebe3b0f84de9
+  - fb43e8887350
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: mummer_nucmer
@@ -105,6 +111,7 @@ tools:
   - 636b049e6141
   - a18fb4f826fc
   - e18267f90096
+  - 7cd7a55a678d
   tool_panel_section_id: multiple_alignments
   tool_panel_section_label: Multiple Alignments
 - name: pipelign

diff --git a/usegalaxy.org/nanopore.yml.lock b/usegalaxy.org/nanopore.yml.lock
@@ -101,6 +101,7 @@ tools:
   - 645159bcee2d
   - a3c4fe6f49ab
   - edbb6c5028f5
+  - 7b379e98b9a9
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: porechop
@@ -179,12 +180,14 @@ tools:
   - cb8dfd28c16f
   - de24438c9988
   - e27815e82dd4
+  - 291923e6f276
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
 - name: pycoqc
   owner: iuc
   revisions:
   - 3a2f2e24c37e
   - dc1500f42073
+  - fae03f3d4bf7
   tool_panel_section_id: nanopore
   tool_panel_section_label: Nanopore
diff --git a/usegalaxy.org/ncbi_blast_.yml.lock b/usegalaxy.org/ncbi_blast_.yml.lock
@@ -12,6 +12,7 @@ tools:
   - a52d2d93e595
   - d999e774072a
   - e25d3acf6e68
+  - cbf3f518b668
   tool_panel_section_id: ncbi_blast_
   tool_panel_section_label: NCBI BLAST+
 - name: kraken2

diff --git a/usegalaxy.org/picard.yml.lock b/usegalaxy.org/picard.yml.lock
@@ -12,5 +12,6 @@ tools:
   - a1f0b3f4b781
   - b502c227b5e6
   - f9242e01365a
+  - 3f254c5ced1d
   tool_panel_section_id: picard
   tool_panel_section_label: Picard
diff --git a/usegalaxy.org/proteomics.yml.lock b/usegalaxy.org/proteomics.yml.lock
@@ -43,6 +43,7 @@ tools:
   - 8934bc76bb52
   - ea0a1d50c83f
   - f522c08e900c
+  - 9c52362ae7bb
   tool_panel_section_id: proteomics
   tool_panel_section_label: Proteomics
 - name: msstats
@@ -53,6 +54,7 @@ tools:
   - 593839e1f2c3
   - 8212e342e482
   - b7034eff0db1
+  - de7593c29499
   tool_panel_section_id: proteomics
   tool_panel_section_label: Proteomics
 - name: eggnog_mapper

diff --git a/usegalaxy.org/qiime2.yml.lock b/usegalaxy.org/qiime2.yml.lock
@@ -961,11 +961,13 @@ tools:
   owner: q2d2
   revisions:
   - ddff0f6d5740
+  - f47ed6c69f5d
   tool_panel_section_id: qiime2
   tool_panel_section_label: QIIME2
 - name: qiime2_core__tools__import
   owner: q2d2
   revisions:
+  - 10447a4b0cc3
   - 18c6b2b6740f
   tool_panel_section_id: qiime2
   tool_panel_section_label: QIIME2
diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock
@@ -81,6 +81,7 @@ tools:
   - cc05793bb896
   - e3d32471da11
   - ebab418107f5
+  - f4d5237a84f6
   tool_panel_section_id: rna_seq
   tool_panel_section_label: RNA-seq
 - name: diamond