Add speclib files to output

galaxyproteomics · Sep 22, 2023 · 7fcdbd0 · 7fcdbd0
1 parent 3462c65
commit 7fcdbd0
Showing 1 changed file with 8 additions and 0 deletions.
diff --git a/tools/diann/diann.xml b/tools/diann/diann.xml
@@ -227,6 +227,8 @@
 
             #if $input.spectral_lib_options.gen_spec_lib
             && cp ./report-lib.tsv '$output_report_lib'
+            && cp ./report-lib.tsv.speclib '$output_report_speclib'
+            && cp ./report-lib.predicted.speclib '$output_report_pred_speclib'
             #end if
     ]]></command>
     <inputs>
@@ -413,6 +415,12 @@
         <data format="tabular" name="output_report_lib" label="${tool.name} on ${on_string}: report-lib.tsv">
             <filter>input['spectral_lib_options']['gen_spec_lib'] == True</filter>
         </data>
+        <data format="tabular" name="output_report_speclib" label="${tool.name} on ${on_string}: report-lib.tsv.speclib">
+            <filter>input['spectral_lib_options']['gen_spec_lib'] == True</filter>
+        </data>
+        <data format="tabular" name="output_report_pred_speclib" label="${tool.name} on ${on_string}: report-lib.predicted.speclib">
+            <filter>input['spectral_lib_options']['gen_spec_lib'] == True</filter>
+        </data>
     </outputs>
     <tests>
         <!-- test for default run -->