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@geneontology

The Gene Ontology Consortium

README.md

Welcome to the geneontology GitHub organization!

The Gene Ontology (GO) knowledgebase is the world’s largest source of information on the functions of genes. This knowledge is both human-readable and machine-readable, and is a foundation for computational analysis of large-scale molecular biology and genetics experiments in biomedical research. For more information, please see our website, http://geneontology.org/.

Overview of some of the key repositories in this organization:

  • geneontology.github.io - GO documentation
  • go-ontology - Source ontology files for the Gene Ontology. This is primarily for the developers of the GO and contains the source code for the GO ontology. To download ontology files, please use the Downloads menu on our website.
  • go-annotation - Issues about GO annotations (manual & automated)
  • go-site - Metadata, tools, and files associated with the Gene Ontology website
  • noctua - Graph-based modeling / editing tools for biology
  • helpdesk - A place for the GO community to ask for help or report issues.

Getting help

If you have general questions about GO, check our Frequently Asked Questions.

If you have a specific question about GO, its data, usage, software, or services, please create a ticket in our discussion tracker.

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  1. helpdesk helpdesk Public

    The Gene Ontology Helpdesk

    16 6

  2. go-announcements go-announcements Public

    Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.

    14 1

  3. geneontology.github.io geneontology.github.io Public

    Repository for storing GO documentation, directly available through the general GO site

    SCSS 7 10

  4. go-ontology go-ontology Public

    Source ontology files for the Gene Ontology

    Makefile 225 40

  5. go-annotation go-annotation Public

    This repository hosts the tracker for issues pertaining to GO annotations.

    Python 36 10

  6. go-site go-site Public

    A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

    JavaScript 47 89

Repositories

Showing 10 of 125 repositories
  • go-ontology Public

    Source ontology files for the Gene Ontology

    geneontology/go-ontology’s past year of commit activity
    Makefile 225 CC-BY-4.0 40 734 52 Updated Dec 23, 2024
  • gocam-py Public

    Draft data model for GO-CAMs

    geneontology/gocam-py’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 2 Updated Dec 23, 2024
  • noctua-models Public

    This is the data repository for the models created and edited with the Noctua tool stack for GO.

    geneontology/noctua-models’s past year of commit activity
    Makefile 10 CC-BY-4.0 3 34 (1 issue needs help) 2 Updated Dec 21, 2024
  • web-components Public

    EXPERIMENTAL Unified web component library

    geneontology/web-components’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 4 0 Updated Dec 20, 2024
  • wc-gocam-viz Public

    Web component to visualize GO-CAMs

    geneontology/wc-gocam-viz’s past year of commit activity
    TypeScript 2 BSD-3-Clause 2 20 0 Updated Dec 20, 2024
  • obographs Public

    Basic and Advanced OBO Graphs: specification and reference implementation

    geneontology/obographs’s past year of commit activity
    Java 64 12 50 2 Updated Dec 20, 2024
  • pipeline-raw-go-cam Public

    [EXPERIMENTAL] Curation GO-CAMs re-published for internal use.

    geneontology/pipeline-raw-go-cam’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Dec 19, 2024
  • go-annotation Public

    This repository hosts the tracker for issues pertaining to GO annotations.

    geneontology/go-annotation’s past year of commit activity
    Python 36 BSD-3-Clause 10 388 2 Updated Dec 19, 2024
  • geneontology.github.io Public

    Repository for storing GO documentation, directly available through the general GO site

    geneontology/geneontology.github.io’s past year of commit activity
    SCSS 7 MIT 10 27 11 Updated Dec 19, 2024
  • pipeline Public

    Declarative pipeline for the Gene Ontology.

    geneontology/pipeline’s past year of commit activity
    5 BSD-3-Clause 5 87 2 Updated Dec 17, 2024
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