Update docs

docs/developers/introduction.md

@@ -160,7 +160,6 @@ workflow:
       script: nf-core/taxprofiler
       revision: 1.1.8
       params:
-        input: "${input}"
         run_kraken2: ${{profiler == "kraken2"}}
         run_metaphlan: ${{profiler == "metaphlan"}}
         databases: "https://raw.githubusercontent.com/nf-core/test-datasets/taxprofiler/database_full_v1.2.csv"
@@ -181,7 +180,7 @@ workflow:
 
 Cloudgene supports the connection of multiple pipelines by allowing you to define workflows that consist of multiple steps. Each step can execute a separate pipeline, and the output of one pipeline can be passed as the input to the next.
 
-In this example, Cloudgene connects two Nextflow pipelines (nf-core/fetchngs and nf-core/taxprofiler) into a single workflow, making it easy to fetch data and then run a taxonomic profiler.
+In this example, Cloudgene connects two Nextflow pipelines (nf-core/fetchngs and nf-core/taxprofiler) into a single workflow, making it easy to fetch data and then run a taxonomic profiler using the created samplesheet file.
 
 ```yaml
 id: taxprofiler

docs/developers/outputs.md

@@ -1,10 +1,10 @@
 # Outputs
 
-Output parameters can be used as placeholders for folders or files which are created by steps. Cloudgene supports POSIX compatible filesystems (e.g. Linux or OS X) and the *Hadoop Distributed File System* (HDFS). Cloudgene creates and manages these folders for you as well as enables downloading the files through the web interface.
+Output parameters can be used as placeholders for folders or files which are created by steps. Cloudgene creates and manages these folders for you as well as enables downloading the files through the web interface.
 
 Output parameters are defined in the `outputs` section where each parameter is defined by an unique `id`, a textual `description` and a `type`.
 
-```yaml hl_lines="6 7 8 9 10 11"
+```yaml hl_lines="6 7 8 9 10"
 id: output-example
 name: Output Example
 version: 1.0
@@ -13,9 +13,6 @@ workflow:
     - id: output
       description: Output Folder
       type: folder
-      mergeOutput: false
-      download: true
-      zip: false
 ```
 
 The value of the parameter can be referenced by `$id` in the workflow. In this example, we use the `touch` command to create a file in an output folder:
@@ -32,9 +29,6 @@ workflow:
     - id: output
       description: Output Folder
       type: folder
-      mergeOutput: false
-      download: true
-      zip: false
 ```
 
 ## Properties