Fix command

genomic-medicine-sweden · Nov 4, 2024 · bb378a1 · bb378a1
1 parent b92a7af
commit bb378a1
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -60,8 +60,9 @@ jobs:
 
       - name: Run pipeline with test data
         run: |
-          nextflow run main.nf \
+          nextflow  \
             -log $(pwd)/nextflow.log \
+            run main.nf \
             --outdir results \
             --db $(pwd)/assets/databases/emu_database \
             --seqtype map-ont \