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Output per-base depth in d4 format #537

Merged
merged 4 commits into from
Jan 20, 2025
Merged

Output per-base depth in d4 format #537

merged 4 commits into from
Jan 20, 2025

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fellen31
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@fellen31 fellen31 commented Jan 17, 2025 •
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Closes #249, #529

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • Make sure your code lints (nf-core pipelines lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@fellen31 fellen31 linked an issue Jan 17, 2025 that may be closed by this pull request
Coverage analysis #529
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@fellen31 fellen31 changed the title output per-base depth in d4 format Output per-base depth in d4 format Jan 17, 2025
@fellen31 fellen31 marked this pull request as ready for review January 20, 2025 13:13
@fellen31 fellen31 requested a review from a team as a code owner January 20, 2025 13:13
@fellen31 fellen31 merged commit a66cbbe into genomic-medicine-sweden:dev Jan 20, 2025
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@fellen31 fellen31 deleted the d4 branch January 20, 2025 14:40
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@ramprasadn ramprasadn ramprasadn approved these changes

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Coverage analysis Run mosdepth with --d4
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@fellen31 @ramprasadn