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Fixes for HEMCO diagnostic config file HEMCO_Diagn.rc #2402

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merged 3 commits into from
Aug 12, 2024
Merged

Fixes for HEMCO diagnostic config file HEMCO_Diagn.rc #2402

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ce46f08
Update HEMCO_Diagn.rc templates to use offline MOH biogenic emissions
lizziel Jul 30, 2024
cc374fd
Auto-set GCHP emissions sources in HEMCO_Diagn.rc based on HEMCO_Conf…
lizziel Jul 30, 2024
ee4b30d
Update changelog
lizziel Aug 9, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -9,6 +9,7 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
- Added ModelEe.2 (GCAP 2.0) simulation to integration tests for GCClassic
- Added simulation with all diagnostics on in HISTORY.rc to integration tests for GCClassic (including Planeflight + ObsPack) and GCHP
- Added descriptive error message in `Interfaces/GCHP/gchp_historyexportsmod.F90`
- Auto-update GCHP HEMCO_Diagn.rc settings at run-time to ensure seasalt, dust, soil NOx, and biogenic emissions match settings in HEMCO_Config.rc

### Fixed
- Added brackets around `exempt-issue-labels` list in `.github/workflows/stale.yml`
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2 changes: 1 addition & 1 deletion run/GCClassic/HEMCO_Diagn.rc.templates/HEMCO_Diagn.rc.fullchem
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Expand Up @@ -297,7 +297,7 @@ EmisMGLY_BioBurn MGLY 111 -1 -1 2 kg/m2/s MGLY_emission_flux_from_b
EmisMOH_Total MOH -1 -1 -1 3 kg/m2/s MOH_emission_flux_from_all_sectors
EmisMOH_Anthro MOH 0 1 -1 3 kg/m2/s MOH_emission_flux_from_anthropogenic
EmisMOH_BioBurn MOH 111 -1 -1 2 kg/m2/s MOH_emission_flux_from_biomass_burning
EmisMOH_Biogenic MOH 108 -1 -1 2 kg/m2/s MOH_emission_flux_from_biogenic_sources
EmisMOH_Biogenic MOH 0 4 -1 2 kg/m2/s MOH_emission_flux_from_biogenic_sources
EmisMOH_Ocean MOH 101 -1 -1 2 kg/m2/s MOH_emission_flux_from_ocean
EmisMOH_Ship MOH 0 10 -1 2 kg/m2/s MOH_emission_flux_from_ships

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2 changes: 1 addition & 1 deletion run/GCHP/HEMCO_Diagn.rc.templates/HEMCO_Diagn.rc.fullchem
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Expand Up @@ -297,7 +297,7 @@ EmisMGLY_BioBurn MGLY 111 -1 -1 2 kg/m2/s MGLY_emission_flux_from_b
EmisMOH_Total MOH -1 -1 -1 3 kg/m2/s MOH_emission_flux_from_all_sectors
EmisMOH_Anthro MOH 0 1 -1 3 kg/m2/s MOH_emission_flux_from_anthropogenic
EmisMOH_BioBurn MOH 111 -1 -1 2 kg/m2/s MOH_emission_flux_from_biomass_burning
EmisMOH_Biogenic MOH 108 -1 -1 2 kg/m2/s MOH_emission_flux_from_biogenic_sources
EmisMOH_Biogenic MOH 0 4 -1 2 kg/m2/s MOH_emission_flux_from_biogenic_sources
EmisMOH_Ocean MOH 101 -1 -1 2 kg/m2/s MOH_emission_flux_from_ocean
EmisMOH_Ship MOH 0 10 -1 2 kg/m2/s MOH_emission_flux_from_ships

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56 changes: 56 additions & 0 deletions run/GCHP/setCommonRunSettings.sh.template
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Expand Up @@ -773,6 +773,62 @@ if [[ ${lightningClimEntry} != "missing" ]]; then
fi
fi

#### Auto-update offline/online emissions settings in HEMCO_Diagn.rc based on HEMCO_Config.rc
# NOTES:
# - Includes seasalt, soilNOx, dust, and biogenic emissions only
# - Sets Emis* diagnostics to extension emissions if extension is on in HEMCO_Config.rc
# - Sets Emis* diagnostics to base emissions (offline) if extension is off in HEMCO_Config.rc

# Dust
dustExt=$(grep "105.*DustDead" HEMCO_Config.rc || echo "missing")
if [[ ${dustExt} != "missing" ]]; then
dustSetting=(${dustExt// / })
if [[ ${dustSetting[3]} = "on" ]]; then
sed -i -e 's|0 3 |105 -1|' HEMCO_Diagn.rc
else
sed -i -e 's|105 -1|0 3 |' HEMCO_Diagn.rc
fi
fi

# Sea salt
seasExt=$(grep "107.*SeaSalt" HEMCO_Config.rc || echo "missing")
if [[ ${seasExt} != "missing" ]]; then
seasSetting=(${seasExt// / })
if [[ ${seasSetting[3]} = "on" ]]; then
sed -i -e 's|SALA 0 3 |SALA 107 -1|' HEMCO_Diagn.rc
sed -i -e 's|SALC 0 3 |SALC 107 -1|' HEMCO_Diagn.rc
sed -i -e 's|AL 0 3 |AL 107 -1|' HEMCO_Diagn.rc
sed -i -e 's|CL 0 3 |CL 107 -1|' HEMCO_Diagn.rc
else
sed -i -e 's|SALA 107 -1|SALA 0 3 |' HEMCO_Diagn.rc
sed -i -e 's|SALC 107 -1|SALC 0 3 |' HEMCO_Diagn.rc
sed -i -e 's|AL 107 -1|AL 0 3 |' HEMCO_Diagn.rc
sed -i -e 's|CL 107 -1|CL 0 3 |' HEMCO_Diagn.rc
fi
fi

# Biogenic
biogExt=$(grep "108.*MEGAN" HEMCO_Config.rc || echo "missing")
if [[ ${biogExt} != "missing" ]]; then
biogSetting=(${biogExt// / })
if [[ ${biogSetting[3]} = "on" ]]; then
sed -i -e 's|0 4 |108 -1|' HEMCO_Diagn.rc
else
sed -i -e 's|108 -1|0 4 |' HEMCO_Diagn.rc
fi
fi

# SoilNOx
soilExt=$(grep "104.*SoilNOx" HEMCO_Config.rc || echo "missing")
if [[ ${soilExt} != "missing" ]]; then
soilSetting=(${soilExt// / })
if [[ ${soilSetting[3]} = "on" ]]; then
sed -i -e 's|NO 0 3 |NO 104 -1|' HEMCO_Diagn.rc
else
sed -i -e 's|NO 104 -1|NO 0 3 |' HEMCO_Diagn.rc
fi
fi

#### Done
print_msg " "
print_msg "setCommonRunSettings.sh done"
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