GHEX

Generic exascale-ready library for halo-exchange operations on variety of grids/meshes.

Documentation and instructions at GHEX Documentation.

Installation instructions

Requirements

• C++17 compiler (gcc or clang)
• CMake (3.21 or later)
• GridTools (available as submodule with GHEX_USE_BUNDLED_LIBS=ON)
• Boost headers (1.80 or later)
• MPI
• UCX (optional)
• Libfabric (optional)
• Xpmem (optional)
• oomph (0.3.0 or later, available as submodule with GHEX_USE_BUNDLED_LIBS=ON)
• hwmalloc (0.3.0 or later, available as submodule with GHEX_USE_BUNDLED_LIBS=ON)
• CUDA Toolkit (optional, 11.0 or later)
• Rocm/Hip Toolkit (optional, 4.5.1 or later)
• Google Test (only when GHEX_WTIH_TESTING=ON, available as submodule with GHEX_USE_BUNDLED_LIBS=ON)
• parmetis, metis (optional)
• atlas (optional)
• gfortran compiler (optional, for Fortran bindings)
• Python3 (optional, for Python bindings )
• MPI4PY (optional, for Python bindings )
• Pybind11 (optional, for Python bindings)

From Source

git clone https://github.com/ghex-org/GHEX.git
cd GHEX
git submodule update --init --recursive
mkdir -p build && cd build
cmake -DGHEX_WITH_TESTING=ON -DGHEX_USE_BUNDLED_LIBS=ON ..
make -j8
make test

CMake options

Option	Allowed Values	Default	Description
CMAKE_INSTALL_PREFIX=	<path>	/usr/local	Choose install path prefix
CMAKE_BUILD_TYPE=	{Release, Debug}	Release	Choose type of build
GHEX_USE_BUNDLED_LIBS=	{ON, OFF}	OFF	Use available git submodules
GHEX_USE_GPU=	{ON, OFF}	OFF	Enable GPU
GHEX_GPU_TYPE=	{AUTO, NVIDIA, AMD}	AUTO	Choose GPU type
CMAKE_CMAKE_CUDA_ARCHITECTURES=	list of architectures	"60;70;75"	Only relevant for GHEX_GPU_TYPE=NVIDIA
CMAKE_CMAKE_HIP_ARCHITECTURES=	list of architectures	"gfx900;gfx906"	Only relevant for GHEX_GPU_TYPE=AMD
GHEX_BUILD_FORTRAN=	{ON, OFF}	OFF	Build with Fortran bindings
GHEX_BUILD_PYTHON_BINDINGS=	{ON, OFF}	OFF	Build with Python bindings
GHEX_PYTHON_LIB_PATH=	<path>	${CMAKE_INSTALL_PREFIX}/<python-site-packages-path>	Installation directory for GHEX's Python package
GHEX_WITH_TESTING=	{ON, OFF}	OFF	Build unit tests
GHEX_USE_XPMEM=	{ON, OFF}	OFF	Use Xpmem
GHEX_TRANSPORT_BACKEND=	{MPI, UCX, LIBFABRIC}	MPI	Choose transport backend

Pip Install

python -m venv ghex_venv
. ghex_venv/bin/activate
python -m pip install ghex

Pertinent environment variables

Variable	Allowed Values	Default	Description
GHEX_USE_GPU=	{ON, OFF}	OFF	Enable GPU
GHEX_GPU_TYPE=	{AUTO, NVIDIA, AMD}	AUTO	Choose GPU type
GHEX_GPU_ARCH=	list of archs	"60;70;75;80"/ "gfx900;gfx906"	GPU architecture
GHEX_TRANSPORT_BACKEND=	{MPI, UCX, LIBFABRIC}	MPI	Choose transport backend

Acknowledgements

The development of GHEX was supported partly by The Partnership for Advanced Computing in Europe (PRACE). PRACE is an international non-profit association with its seat in Brussels. The PRACE Research Infrastructure provides a persistent world-class high performance computing service for scientists and researchers from academia and industry in Europe. The computer systems and their operations accessible through PRACE are provided by 5 PRACE members (BSC representing Spain, CINECA representing Italy, ETH Zurich/CSCS representing Switzerland, GCS representing Germany and GENCI representing France). The Implementation Phase of PRACE receives funding from the EU’s Horizon 2020 Research and Innovation Programme (2014-2020) under grant agreement 823767. For more information, see www.prace-ri.eu.