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Create giotto-tda version 0.2.2 #413

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merged 8 commits into from
Jun 2, 2020
Merged

Create giotto-tda version 0.2.2 #413

merged 8 commits into from
Jun 2, 2020

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ulupo
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@ulupo ulupo commented May 31, 2020

  • Bump version number to 0.2.2.
  • Add release notes.
  • Turn CODE_AUTHORS and CODE_AUTHORS into .rst files.

@ulupo ulupo requested review from wreise, ammedmar and gtauzin May 31, 2020 18:55
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ulupo commented May 31, 2020

Notifying everyone who was involved in making this version so they can check if they are satisfied by the release notes.

@ulupo ulupo requested a review from MonkeyBreaker May 31, 2020 18:56
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ulupo commented May 31, 2020

0.2.2_notes.zip
The rendered release notes can be seen in the attached zip, courtesy of @wreise.

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lgtm

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@ammedmar ammedmar left a comment

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Congratulations!

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Great work !

@ulupo ulupo merged commit 9369caa into giotto-ai:master Jun 2, 2020
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ulupo commented Jun 2, 2020

Thanks all!

ulupo added a commit that referenced this pull request Jun 2, 2020
* Fix issue with docstring example and document reshaping of 1D outputs (#396)

* Toc (#394)

* Update P landscapes

Signed-off-by: ammedmar <anibal@medina-mardones.com>

* Add distances, inner products and kernels glossary entry

Signed-off-by: ammedmar <anibal@medina-mardones.com>

* Remake vectorization changes

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Change [] for \lbrack \rbrack

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after W's comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after W's comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update afte W's second comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's second comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's third comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's 4th comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Remove concept k-skeleton

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Add table of content

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Add Lp & lp. Update landscape

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update TOC indentation

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Add heat vectorizations entry

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update indentation of TOC

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Fix extra spacing in bibliography

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update bibliography hack for caps

Signed-off-by: ammedmar <ammedmar@gmail.com>

* After Umbe's Comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after issue #398

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

* Update after Umbe's 2nd comments

Signed-off-by: ammedmar <ammedmar@gmail.com>

Co-authored-by: ammedmar <anibal@medina-mardones.com>

* Speedup windows pipeline (#402)

* Improve boost location for azure pipeline on windows

The boost version installed in the pipeline is now used

Signed-off-by: julian <julian.burellaperez@heig-vd.ch>
Co-authored-by: Umberto Lupo <46537483+ulupo@users.noreply.github.com>

* Make bindings public (#395)

* Make bindings public

Signed-off-by: Guillaume Tauzin <guillaumetauzin.ut@gmail.com>

* Fix pipeline on Mac (#407)

* Refresh ccache

* Enforce CXX standard to 14 on each module

* Change variable name to comply with E741

Signed-off-by: julian <julian.burellaperez@heig-vd.ch>
Co-authored-by: Umberto Lupo <46537483+ulupo@users.noreply.github.com>

* Mapper visualisation refactor: fix bugs, add summary statistics in hovertext, improve opacity, remove matplotlib dependency, add node_scale kwarg, add clone_pipeline kwarg to interactive plots,restructure/rename plotly_kwargs, improve code (#406)

* Refactor of `mapper/visualisation.py` and `mapper/utils/visualisation.py`
- Removal of color scaling
- More modularity
- Variable and function name changes
- Remove matplotlib functions used for hoverlabel background color
- Remove cmin and cmax
- Change return signature of some functions

* Add test-output.xml to .gitignore

* Replace "text" key in plot_options["node_trace"] with "hovertext"

* Improve width and opacity of nodes and edges

* Display summary statistics in hovertext with significant figure rounding via new n_sig_figs kwarg

* Rename plotly_kwargs to plotly_params

* Remove matplotlib installation requirement

* Fix mapper notebook

* Add small comment on use of matplotlib in voids_on_the_plane

* Place matplotlib in examples requirement in setup.py

* Improve docstring of make_mapper_pipeline

* Improve examples for make_mapper_pipeline and create one for plot_static_mapper_graph

* Hide set_node_sizeref, add node_scale kwarg, add clone_pipeline kwarg to plot_interactive_mapper_graph

- Update docstrings
- Update quickstart notebook

* Add helper function for colorscale-based interpolations, improve use of plotly_params

Static and interactive plots display the expect hoverlabel colors in 3D, or white if things go wrong. Thanks to @lewtun for pointing out that this was needed.

* Improve docstrings

* Hide visualization module in mapper/utils

* Add pip install matplotlib to notebook tests in manylinux job (#410)

* Fix mapper docstring issues following #406 (#411)

* Fix issues with mapper docs following #406

* Create giotto-tda version 0.2.2 (#413)

* Turn CODE_OWNERS and CODE_AUTHORS into an rst file

* Bump version number to 0.2.2

* Add release notes for v0.2.2

Co-authored-by: Anibal M. Medina-Mardones <ammedmar@gmail.com>
Co-authored-by: ammedmar <anibal@medina-mardones.com>
Co-authored-by: REDS institute <reds-heig@users.noreply.github.com>
Co-authored-by: Guillaume Tauzin <guillaumetauzin.ut@gmail.com>
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4 participants