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Add Clinical Quality Language
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antvaset committed Jul 24, 2024
1 parent 39fd5e9 commit 5832774
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3 changes: 3 additions & 0 deletions .gitmodules
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path = vendor/grammars/vscode-codeql
url = https://github.com/github/vscode-codeql
branch = main
[submodule "vendor/grammars/vscode-cql"]
path = vendor/grammars/vscode-cql
url = https://github.com/cqframework/vscode-cql.git
[submodule "vendor/grammars/vscode-cue"]
path = vendor/grammars/vscode-cue
url = https://github.com/cue-sh/vscode-cue
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2 changes: 2 additions & 0 deletions grammars.yml
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Expand Up @@ -1124,6 +1124,8 @@ vendor/grammars/vscode-cadence:
- source.cadence
vendor/grammars/vscode-codeql:
- source.ql
vendor/grammars/vscode-cql:
- source.cql
vendor/grammars/vscode-cue:
- source.cue
vendor/grammars/vscode-curry:
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10 changes: 10 additions & 0 deletions lib/linguist/languages.yml
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Expand Up @@ -880,6 +880,16 @@ COLLADA:
codemirror_mode: xml
codemirror_mime_type: text/xml
language_id: 49
CQL:
type: data
color: "#105eab"
tm_scope: source.cql
ace_mode: cql
codemirror_mode: cql
codemirror_mime_type: text/cql
extensions:
- ".cql"
language_id: 71155397
CSON:
type: data
color: "#244776"
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28 changes: 28 additions & 0 deletions samples/CQL/ImagingReportsCQM.cql
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library ImagingReportsCQM version '1.0.0'

using FHIR version '4.0.1'

include FHIRHelpers version '4.0.1' called FHIRHelpers
include CQMCommon version '1.0.0' called CQMCommon

parameter MeasurementPeriod default Interval[@2024, @2025)

context Patient

define "Initial Population":
Patient.gender = 'female' and AgeInYearsAt(start of "MeasurementPeriod") >= 18

define "Denominator":
"Initial Population"

define "Denominator Exclusion":
Patient.gender = 'male' // Exclude males

define "Denominator Exception":
exists ( [Condition: CQMCommon."Pregnancy"] Pregnancy ) // Patient is pregnant

define "Numerator":
exists (
[DiagnosticReport: CQMCommon."Imaging Report"] I
where I.status = 'final'
)
40 changes: 40 additions & 0 deletions samples/CQL/LabTestsCDS.cql
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library LabTestsCDS version '1.1.0'

using FHIR version '4.0.1'

include FHIRHelpers version '4.0.1' called FHIRHelpers

valueset "Female Administrative Sex": '2.16.840.1.113883.3.560.100.2'
valueset "Diabetes": '2.16.840.1.113883.3.464.1003.103.12.1001'
valueset "Hypertension": '2.16.840.1.113883.3.464.1003.104.12.1001'
valueset "Cholesterol Test": '2.16.840.1.113883.3.464.1003.110.12.1055'
valueset "Blood Pressure Test": '2.16.840.1.113883.3.464.1003.106.12.1001'

context Patient

define "Patient 18 or Older":
AgeInYears() >= 18

define "Patient is Female":
Patient.gender in "Female Administrative Sex"

define "Lookback Year":
Interval[Today() - 12 months - 1 days, Today() - 1 day]

define "Patient Has Diabetes":
exists ([Condition: "Diabetes"] C)

define "Patient Has Hypertension":
exists ([Condition: "Hypertension"] C)

define "Patient Had Cholesterol Test in Last Year":
exists ([Observation: "Cholesterol Test"] R where R.effective during "Lookback Year" and R.value is not null)

define "Patient Had Blood Pressure Test in Last Year":
exists ([Observation: "Blood Pressure Test"] R where R.effective during "Lookback Year" and R.value is not null)

define "Patient Needs Cholesterol Test":
"Patient 18 or Older" and "Patient Has Diabetes" and not "Patient Had Cholesterol Test in Last Year"

define "Patient Needs Blood Pressure Test":
"Patient 18 or Older" and "Patient Has Hypertension" and not "Patient Had Blood Pressure Test in Last Year"
34 changes: 34 additions & 0 deletions samples/SQL/booksdb.cql
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CREATE KEYSPACE booksdb WITH REPLICATION = { 'class' : 'SimpleStrategy', 'replication_factor' : 1 };

USE booksdb;

CREATE TABLE books (
bookid uuid,
title varchar,
author varchar,
genre varchar,
tags list<varchar>,
published_date timestamp,
PRIMARY KEY (bookid)
);

CREATE TABLE book_rating (
bookid uuid,
rating_counter counter,
rating_total counter,
PRIMARY KEY (bookid)
);

CREATE TABLE genre_index (
genre varchar,
bookid uuid,
timestamp timestamp,
PRIMARY KEY (genre, bookid)
);

CREATE TABLE comments_by_book (
bookid uuid,
comment_ts timestamp,
comment varchar,
PRIMARY KEY (bookid, comment_ts)
) WITH CLUSTERING ORDER BY (comment_ts DESC);
1 change: 1 addition & 0 deletions vendor/README.md
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Expand Up @@ -82,6 +82,7 @@ This is a list of grammars that Linguist selects to provide syntax highlighting
- **COBOL:** [spgennard/vscode_cobol](https://github.com/spgennard/vscode_cobol)
- **CODEOWNERS:** [Alhadis/language-etc](https://github.com/Alhadis/language-etc)
- **COLLADA:** [textmate/xml.tmbundle](https://github.com/textmate/xml.tmbundle)
- **CQL:** [cqframework/vscode-cql](https://github.com/cqframework/vscode-cql)
- **CSON:** [atom/language-coffee-script](https://github.com/atom/language-coffee-script)
- **CSS:** [tree-sitter/tree-sitter-css](https://github.com/tree-sitter/tree-sitter-css) 🐌
- **CUE:** [cue-sh/vscode-cue](https://github.com/cue-sh/vscode-cue)
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1 change: 1 addition & 0 deletions vendor/grammars/vscode-cql
Submodule vscode-cql added at 6f7492
220 changes: 220 additions & 0 deletions vendor/licenses/git_submodule/vscode-cql.dep.yml
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---
name: vscode-cql
version: 6f749215b766aafc4db271146ec24cb44fbaeb52
type: git_submodule
homepage: https://github.com/cqframework/vscode-cql.git
license: apache-2.0
licenses:
- sources: LICENSE
text: |-
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- sources: README.md
text: |-
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