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AnalyzeThis

Guillaume Erny edited this page Jan 30, 2017 · 13 revisions

Peak picking and figure of merits are key methods in separation sciences. The scientific literature is riched in diverse and original algorithms that aim to detect peaks or calculate key figures of merits. Finnee2016 uses the AnalyzeThis class to test or implement algorithms.

Properties

DataIn

DataIn is a 2*n array that contains the data of interest (first column the axe, second column the dependent values - chromatogram, electropherogram, scan...)

BaselineMethod

Is used to implement a baseline method. The format should be: 'Name:parameter1:parameter2:....').

SmoothingMethod

Not implemented yet

PeakPickingMethod

Is used to implement a peak picking method. The format should be: 'Name:parameter1:parameter2:....').

DeconvolutionMethod

Not implemented yet

Baseline

It is a dependent property and will provide the baseline depending on the selected method. Baseline is a structure

.bckgPts % a vector of boolean of the same size as the y values. 'true' indicates that a particular point was considered partaking to the background signal.
.noise % an estimated of the noise
.vals % values for the baseline

PeakList

It is a dependent property where results of the peak picking are recorded. It is a structure with:

.headings % headings of the columns in the table where the results are recorded .data % the results

Deconvolution

Not implemented yet

Methods

AnalyzeThis (constructor method)

This method is used to create an AnalyzeThis object. The data should be pass as an entry variable for example:

myAT = AnalyzeThis(myTrace.Data);

plotAnalysis

plotAnalysis allows visualising the results of the different algorithms.


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