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Parametrise disease name #2712
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This is related to globaldothealth/monkeypox#21. It might be better to work with the script in the Monkeypox repo, since that is almost certainly closer to a Minimum Viable Product. Which parts of the system does this issue relate to? Depending on how much code needs modification to satisfy the requirements of this issue, it might make more sense to break this into multiple issues. |
Both products need parametrization:
It's worthwhile to parametrize disease in this repo as well, since we might soon have to support restricted sources / more complex schemas, if not for the current monkeypox outbreak, but for the next pathogen. Partners may also want to try the full-fledged version for something other than COVID-19. |
Note that it's not just about parameterising the disease name! Other details are also disease specific, e.g. date validation; names of VoCs; perhaps more. |
If you set the env GDH_URL, we use that (R users can set this in .Renvironment, apparently) Otherwise build from the disease/environment you specify.
If you set the env GDH_URL, we use that (R users can set this in .Renvironment, apparently) Otherwise build from the disease/environment you specify.
Calling this done, with the following work covered by other issues:
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Parametrise disease name (which is currently set to covid-19) to make it easy to start up new line list instances.
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