These jupyter notebooks provide a tutorial for the HOOMD-blue simulation software and are included in HOOMD-blue's documentation.
- Introducing HOOMD-blue
- Introducing Molecular Dynamics
- Logging
- Parallel Simulations With MPI
- Custom Actions In Python
- Organizing and Executing Simulations
- Modelling Rigid Bodies
- Modelling Patchy Particles
- Multiparticle Collision Dynamics
You can install HOOMD-blue and run these examples interactively.
Clone the hoomd-examples repository and open the notebooks with the tool you prefer.
These examples use the following python packages:
You can install these from conda-forge:
micromamba install fresnel freud gsd hoomd matplotlib pillow signac signac-flow