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FAQ and Troubleshooting
I get an error when I try to install CoCoPyE using Python 3.12.
CoCoPyE depends on numba, which doesn't support Python 3.12 yet. The installation should work once this is resolved. There is an issue that tracks the progress. Meanwhile, you can use Python 3.8-3.11 (for example by creating a conda environment with
conda create -n cocopye python=3.11).
The Pfam database import takes forever on Windows.
This is a known problem. It happens occasionally that the CoCoPyE downloader does not recognize that the database import is already finished. If the import already took a really long time (>1 hour), you should restart the download. At the moment we aren't able to reliably reproduce this issue. If you have additional information that might help, we would be happy if you open an issue.
I have missing symbols when using the Windows command line.
This happens when the font of your console does not support Unicode. You can change the font in the console settings (Lucida should work well).