DICOM Reader

[borupdaniel]

A node that reads DICOM images and outputs them for use in the canvas. Could also include an option to save in another format like .npy.

[rkrobison]

@borupdaniel, a DICOM reader for GPI exists as part of the GPIdicom library.

[borupdaniel]

Thanks Ryan, I'll have a look at that. I think this would be of general interest — would you be okay with folding it into gpi_core?

[rkrobison]

Sure, no problem. Although, I think the writer still needs some bugs worked out, and there are some places where efficiency could be a lot better.

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On Mar 25, 2020, at 1:30 PM, Daniel Borup ***@***.***> wrote: Thanks Ryan, I'll have a look at that. I think this would be of general interest — would you be okay with folding it into gpi_core? — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#20 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACPUR6FNXTNHA3D47F7IJRLRJJSWRANCNFSM4IU76UYA>.

[borupdaniel]

Hey @rkrobison — have you used the ReadDICOM node from GPIdicom for Enhanced DICOM images before? I'm finding it works ok for a single slice, but not in the case of multi-slice enhanced DICOM.

[rkrobison]

Hi @borupdaniel, that is a good question. I think I might not have tested it with Enhanced DICOM to date.

I think it is supported by pydicom, but it might require some different handling of the data in the GPI node. I don't have any enhanced DICOM data, but I could try to take a look sometime if you want to share some.

[mlewis1973]

fyi pydicom is not installed as a default dependency. one needs to manually install it to use ReadDICOM node