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Provide support for JSON output in tblite flavour #29

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merged 11 commits into from
Aug 7, 2024

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marcelmbn
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@marcelmbn marcelmbn commented Jul 30, 2024

JSON output for multicharge

  • add json_results subroutine (and associated service routines) from tblite with following properties
    • atomic charges
    • summed electrostatic energy
    • gradient of energy vs. cartesian coordinates
  • add boolean for JSON output
  • add validation tests to multicharge

Signed-off-by: Marcel Mueller <marcel.mueller@thch.uni-bonn.de>
@marcelmbn marcelmbn added the enhancement New feature or request label Jul 30, 2024
@marcelmbn marcelmbn requested a review from lukaswittmann July 30, 2024 15:52
@marcelmbn marcelmbn self-assigned this Jul 30, 2024
Signed-off-by: Marcel Mueller <marcel.mueller@thch.uni-bonn.de>
@marcelmbn marcelmbn marked this pull request as ready for review July 30, 2024 15:58
@marcelmbn marcelmbn requested review from marvinfriede and awvwgk July 30, 2024 16:10
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awvwgk commented Jul 31, 2024

There is a CI failure, can you have a look whether this is related to this change?

@marcelmbn
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There is a CI failure, can you have a look whether this is related to this change?

Apparently, the intel oneAPI cannot be set up correctly (from CI / build (ubuntu-latest, meson, debug, intel, 2021) (pull_request):

:: initializing oneAPI environment ...
   aeb9d2f7-4873-4062-b64d-c0777c6bb885.sh: BASH_VERSION = 5.1.16(1)-release
   args: Using "$@" for setvars.sh arguments: 
:: compiler -- latest
:: debugger -- latest
:: dev-utilities -- latest
:: mkl -- latest
:: mpi -- latest
:: tbb -- latest
:: oneAPI environment initialized ::
 
/home/runner/work/_temp/aeb9d2f7-[48](https://github.com/grimme-lab/multicharge/actions/runs/10165719713/job/28147107002?pr=29#step:12:49)73-4062-b64d-c0777c6bb885.sh: line 2: /opt/intel/oneapi/compiler/2024.0/env/vars.sh: No such file or directory
Error: Process completed with exit code 1.
##[debug]Finishing: Setup Intel oneAPI environment

For macos-latest (also not related to the PR):

Run actions/setup-python@v1
Error: Version 3.8 with arch x64 not found
Available versions:

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awvwgk commented Jul 31, 2024

Can you open an issue? This needs to be fixed before any other patch can be merged.

@marcelmbn
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CI fix has been merged.

@marvinfriede
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What about a simple test?

Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
@marcelmbn
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What about a simple test?

Done.

@awvwgk
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awvwgk commented Aug 6, 2024

The new argument should be documented in https://github.com/grimme-lab/multicharge/blob/main/man/multicharge.1.adoc as well.

Signed-off-by: Marcel Müller <marcel.mueller@thch.uni-bonn.de>
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@marcelmbn marcelmbn merged commit 744deab into grimme-lab:main Aug 7, 2024
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@marcelmbn marcelmbn deleted the feat/json_output branch August 7, 2024 12:26
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3 participants