This repository contains notebooks with applications examples for the TidyMS library.
The directory tidyms-paper contains examples for the applications published in the paper A Python-based pipeline for preprocessing LC-MS data for untargeted metabolomics workflows (https://doi.org/10.3390/metabo10100416).
The directory lcms-model contains the analysis and figures generated in the publication Modelling LC-MS data for quality assessment in untargeted metabolomics (ADD DOI after publiation).
- Install tidyms using pip:
pip install tidyms- Some of the examples use the adjustText package to display text in the plots. This package is also available through pip:
pip install adjustText