Use read counts to compute scaling factor for p-value bedGraph files - …

…fix #7
guigolab · Dec 24, 2021 · cbc1503 · cbc1503
1 parent 58d5c45
commit cbc1503
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/chipseq-pipeline.nf b/chipseq-pipeline.nf
@@ -444,7 +444,7 @@ process narrowPeakCallNoInput {
 }
 
 crossedBams.map{ c, t ->
-  [t[0], t[4], c[4]]
+  [t[0], t[6], c[6]]
 }.cross(pileupBedGraphFiles)
 .map { r, s ->
   def (treat, control) = r[1..-1] as long[]