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Add Qvalue threshold + covariates for Differential methylation analysis #10

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mAGLAVE opened this issue Aug 23, 2024 · 0 comments

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mAGLAVE commented Aug 23, 2024 •

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Allow the user to choose a Qvalue threshold and add covariates to the statistical test of the differential methylation analysis.
For covariates:

add a new column (or several) with the suffix "covar_XXX" into the design file.
give the design file as input of the DMR_stat_annot_graph_XXX rule.
filter it with used sample_name and keep "covar_XXX" column(s).
give filtered "covar_XXX" column(s), as a dataframe, to the Logic_regression() function ("covariates" parameter).

mAGLAVE added the enhancement label

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