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22 Open 18 Closed
22 Open 18 Closed
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Issues list

Add trimming rule after Dorado basecalling enhancement New feature or request
#41 opened Sep 19, 2024 by sandratra-rab
Review corresponding table for ENSG to Symbol for T2T bug Something isn't working
#40 opened Sep 13, 2024 by mAGLAVE
@YasminaMes
add bed with DMR enhancement New feature or request
#39 opened Sep 13, 2024 by mAGLAVE
@YasminaMes
Add methylation results for Shores analysis enhancement New feature or request
#34 opened Sep 3, 2024 by mAGLAVE
@YasminaMes
Add barcodes management option when performing basecalling enhancement New feature or request
#33 opened Sep 3, 2024 by sandratra-rab
1
Add an option for Adaptive Sampling samples enhancement New feature or request
#31 opened Sep 2, 2024 by sandratra-rab
Add a merging/consensus step to compare results between variant callers enhancement New feature or request
#30 opened Sep 2, 2024 by sandratra-rab
@sandratra-rab
Add TSS regions to test for methylation (as Alu, CpG, Transcript) enhancement New feature or request
#28 opened Aug 30, 2024 by mAGLAVE
@YasminaMes
Add Genehancer region to test for methylation (as Alu, CpG, Transcript) enhancement New feature or request
#27 opened Aug 30, 2024 by mAGLAVE
@YasminaMes
Mark temp() files for variants analysis enhancement New feature or request
#26 opened Aug 30, 2024 by mAGLAVE
@sandratra-rab
Add methylated bases proportion compared to all sequenced bases enhancement New feature or request
#25 opened Aug 30, 2024 by mAGLAVE
@YasminaMes
Allow SnifflesPlot to work on several samples to cross results enhancement New feature or request
#24 opened Aug 30, 2024 by mAGLAVE
@sandratra-rab
Test on the v100 gpu bug Something isn't working enhancement New feature or request
#23 opened Aug 30, 2024 by mAGLAVE
Make a final report with main results enhancement New feature or request
#22 opened Aug 30, 2024 by mAGLAVE
Add user to choose a custom region to test for methylation (as Alu, CpG, Transcript) enhancement New feature or request
#21 opened Aug 30, 2024 by mAGLAVE
@YasminaMes
Update DMR mean_table script enhancement New feature or request
#20 opened Aug 30, 2024 by mAGLAVE
@YasminaMes
Add a filtering step by canonical chromosomes before spliting by chromosomes enhancement New feature or request
#19 opened Aug 30, 2024 by mAGLAVE
Replace maftools graphs by in house R script enhancement New feature or request
#18 opened Aug 30, 2024 by mAGLAVE
@sandratra-rab
Add Qvalue threshold + covariates for Differential methylation analysis enhancement New feature or request
#10 opened Aug 23, 2024 by mAGLAVE
Add SV visualization Circos plot enhancement New feature or request
#6 opened Jun 27, 2024 by tomgutman
@sandratra-rab
Add DeepSomatic to the Somatic part of the pipeline enhancement New feature or request
#4 opened Jun 25, 2024 by sandratra-rab
2
test clair3 SwitchZygosityBasedOnSVCalls enhancement New feature or request
#2 opened Jun 19, 2024 by tomgutman
ProTip! Updated in the last three days: updated:>2024-10-06.