Update to v0.2.4

hackingmaterials · Feb 18, 2018 · 7c56bca · 7c56bca
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diff --git a/docs/_sources/changelog.rst.txt b/docs/_sources/changelog.rst.txt
@@ -5,6 +5,12 @@
 matminer Changelog
 ==================
 
+**v0.2.4**
+
+* updates to PlotlyFig (A. Dunn, A. Faghaninia)
+* adapt to new OP parameters (N. Zimmermann)
+* bugfixes, cleanups, doc updates (A. Faghaninia, A. Dunn, Q. Wang, N. Zimmermann, A. Jain)
+
 **v0.2.3**
 
 * MDF data retrieval (J. Montoya)

diff --git a/docs/changelog.html b/docs/changelog.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Changlog &#8212; matminer 0.2.3 documentation</title>
+    <title>MatMiner Changlog &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
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+        VERSION:     '0.2.4',
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         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -48,6 +48,12 @@ <h3>Navigation</h3>
 
   <div class="section" id="matminer-changelog">
 <h1>matminer Changelog<a class="headerlink" href="#matminer-changelog" title="Permalink to this headline">¶</a></h1>
+<p><strong>v0.2.4</strong></p>
+<ul class="simple">
+<li>updates to PlotlyFig (A. Dunn, A. Faghaninia)</li>
+<li>adapt to new OP parameters (N. Zimmermann)</li>
+<li>bugfixes, cleanups, doc updates (A. Faghaninia, A. Dunn, Q. Wang, N. Zimmermann, A. Jain)</li>
+</ul>
 <p><strong>v0.2.3</strong></p>
 <ul class="simple">
 <li>MDF data retrieval (J. Montoya)</li>
@@ -219,7 +225,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/contributors.html b/docs/contributors.html
@@ -5,13 +5,13 @@
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   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>MatMiner Contributors &#8212; matminer 0.2.3 documentation</title>
+    <title>MatMiner Contributors &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
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         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -137,7 +137,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/example_bulkmod.html b/docs/example_bulkmod.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Predicting bulk moduli with matminer &#8212; matminer 0.2.3 documentation</title>
+    <title>Predicting bulk moduli with matminer &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -368,7 +368,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/genindex.html b/docs/genindex.html
@@ -6,13 +6,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Index &#8212; matminer 0.2.3 documentation</title>
+    <title>Index &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
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+        VERSION:     '0.2.4',
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         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -38,7 +38,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -675,10 +675,12 @@ <h2 id="H">H</h2>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="matminer.featurizers.html#matminer.featurizers.composition.has_oxidation_states">has_oxidation_states() (in module matminer.featurizers.composition)</a>
 </li>
-      <li><a href="matminer.figrecipes.plotly.html#matminer.figrecipes.plotly.make_plots.PlotlyFig.heatmap_plot">heatmap_plot() (matminer.figrecipes.plotly.make_plots.PlotlyFig method)</a>
+      <li><a href="matminer.figrecipes.plotly.html#matminer.figrecipes.plotly.make_plots.PlotlyFig.heatmap">heatmap() (matminer.figrecipes.plotly.make_plots.PlotlyFig method)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="matminer.figrecipes.plotly.html#matminer.figrecipes.plotly.make_plots.PlotlyFig.heatmap_plot">heatmap_plot() (matminer.figrecipes.plotly.make_plots.PlotlyFig method)</a>
+</li>
       <li><a href="matminer.figrecipes.plotly.html#matminer.figrecipes.plotly.make_plots.PlotlyFig.histogram">histogram() (matminer.figrecipes.plotly.make_plots.PlotlyFig method)</a>
 </li>
       <li><a href="matminer.featurizers.html#matminer.featurizers.stats.PropertyStats.holder_mean">holder_mean() (matminer.featurizers.stats.PropertyStats static method)</a>
@@ -933,6 +935,8 @@ <h2 id="O">O</h2>
 <h2 id="P">P</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="matminer.figrecipes.plotly.html#matminer.figrecipes.plotly.make_plots.PlotlyFig.parallel_coordinates">parallel_coordinates() (matminer.figrecipes.plotly.make_plots.PlotlyFig method)</a>
+</li>
       <li><a href="matminer.data_retrieval.html#matminer.data_retrieval.retrieve_Citrine.parse_scalars">parse_scalars() (in module matminer.data_retrieval.retrieve_Citrine)</a>
 </li>
       <li><a href="matminer.featurizers.html#matminer.featurizers.structure.PartialRadialDistributionFunction">PartialRadialDistributionFunction (class in matminer.featurizers.structure)</a>
@@ -1036,6 +1040,8 @@ <h2 id="T">T</h2>
       <li><a href="matminer.utils.tests.html#matminer.utils.tests.test_conversions.TestConversions.test_str_to_composition">test_str_to_composition() (matminer.utils.tests.test_conversions.TestConversions method)</a>
 </li>
       <li><a href="matminer.utils.tests.html#matminer.utils.tests.test_conversions.TestConversions.test_structure_to_composition">test_structure_to_composition() (matminer.utils.tests.test_conversions.TestConversions method)</a>
+</li>
+      <li><a href="matminer.utils.tests.html#matminer.utils.tests.test_conversions.TestConversions.test_structure_to_oxidstructure">test_structure_to_oxidstructure() (matminer.utils.tests.test_conversions.TestConversions method)</a>
 </li>
       <li><a href="matminer.utils.tests.html#matminer.utils.tests.test_conversions.TestConversions">TestConversions (class in matminer.utils.tests.test_conversions)</a>
 </li>
@@ -1111,7 +1117,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/index.html b/docs/index.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>matminer (Materials Data Mining) &#8212; matminer 0.2.3 documentation</title>
+    <title>matminer (Materials Data Mining) &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
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         URL_ROOT:    './',
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+        VERSION:     '0.2.4',
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         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="#">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="#">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -211,7 +211,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="#">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="#">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/installation.html b/docs/installation.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Installing matminer &#8212; matminer 0.2.3 documentation</title>
+    <title>Installing matminer &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
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+        VERSION:     '0.2.4',
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         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -127,7 +127,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.data_retrieval.html b/docs/matminer.data_retrieval.html
@@ -5,13 +5,13 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>matminer.data_retrieval package &#8212; matminer 0.2.3 documentation</title>
+    <title>matminer.data_retrieval package &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -298,7 +298,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.datasets.html b/docs/matminer.datasets.html
@@ -5,13 +5,13 @@
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   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>matminer.datasets package &#8212; matminer 0.2.3 documentation</title>
+    <title>matminer.datasets package &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
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@@ -134,7 +134,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
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diff --git a/docs/matminer.datasets.test_datasets.html b/docs/matminer.datasets.test_datasets.html
@@ -5,13 +5,13 @@
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   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>matminer.datasets.test_datasets package &#8212; matminer 0.2.3 documentation</title>
+    <title>matminer.datasets.test_datasets package &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
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         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
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         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>  
 
@@ -126,7 +126,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>
 

diff --git a/docs/matminer.descriptors.html b/docs/matminer.descriptors.html
@@ -5,13 +5,13 @@
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   <head>
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>matminer.descriptors package &#8212; matminer 0.2.3 documentation</title>
+    <title>matminer.descriptors package &#8212; matminer 0.2.4 documentation</title>
     <link rel="stylesheet" href="_static/nature.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript">
       var DOCUMENTATION_OPTIONS = {
         URL_ROOT:    './',
-        VERSION:     '0.2.3',
+        VERSION:     '0.2.4',
         COLLAPSE_INDEX: false,
         FILE_SUFFIX: '.html',
         HAS_SOURCE:  true,
@@ -37,7 +37,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
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@@ -117,7 +117,7 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="py-modindex.html" title="Python Module Index"
              >modules</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.3 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">matminer 0.2.4 documentation</a> &#187;</li> 
       </ul>
     </div>