Propagate cluster related properties in caprieval
#978
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runpython run_tests.py -b
This PR adds the extraction and combination of cluster-related information from the models into the
extract_data_from_capri_class
method. I've also updated the test to cover this behaviour and added a deprecation notice to the soon-to-be-removed branch withless_io=false
- see #970Also keep in mind that this retrieval of clustering information should not be done via the model object - by doing this we are breaking the modular design by using the PDBFile object as means to transport information instead of the ontology object. Should be addressed in a separate PR tho