ignore_changes causes keys in other flatmapped objects to be lost from diff #12897
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When transforming a diff from DestroyCreate to a simple update cause be
ignore_changes, we need to filter each flatmapped container as a whole
to ensure that unchanged keys aren't lost in the update.
Previously, unchanged fields in a list, set or map were being filtered out of the diff because they looked like empty, but because they are updated as a whole these fields would then be removed from the instance.
Fixes #9043