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@hds-sandbox

Health Data Science Sandbox

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  1. proteomics-sandbox proteomics-sandbox Public

    A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interf…

    HTML 9 2

  2. Intro-NGS-AU_course Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    Jupyter Notebook 7 4

  3. bulk_RNAseq_course bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    Shell 6 4

  4. scRNASeq_course scRNASeq_course Public

    Repository for single cell RNAseq course of the Danish Health Data Science Sandbox project.

    Jupyter Notebook 4 2

  5. hds-sandbox.github.io hds-sandbox.github.io Public

    Website for the Health Data Science Sandbox

    HTML 2 3

  6. AlphaFold_Workshop AlphaFold_Workshop Public

    Predict protein folding structures using ColabFold. Gain a deeper understanding of protein folding prediction with AlphaFold2 and MMseqs2. Run the Jupyter notebook on UCloud, learn to interpret res…

    Jupyter Notebook 2

Repositories

Showing 10 of 30 repositories
  • GWAS_course Public

    GWAS course material

    hds-sandbox/GWAS_course’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Feb 14, 2025
  • AdvancedSingleCell Public

    Advanced tutorials for single cell data analysis

    hds-sandbox/AdvancedSingleCell’s past year of commit activity
    Jupyter Notebook 2 CC-BY-SA-4.0 0 0 0 Updated Feb 14, 2025
  • GDKworkshops Public

    Workshops on GenomeDK cluster at Aarhus University: Introduction, pipeline creation with gwf, and more

    hds-sandbox/GDKworkshops’s past year of commit activity
    Shell 0 CC-BY-SA-4.0 1 0 2 Updated Feb 13, 2025
  • Intro-NGS-AU_course Public

    Repository for the NGS summer course at Aarhus university

    hds-sandbox/Intro-NGS-AU_course’s past year of commit activity
    Jupyter Notebook 7 4 0 0 Updated Feb 11, 2025
  • hds-sandbox.github.io Public

    Website for the Health Data Science Sandbox

    hds-sandbox/hds-sandbox.github.io’s past year of commit activity
    HTML 2 3 0 1 Updated Feb 6, 2025
  • HPC-lab Public
    hds-sandbox/HPC-lab’s past year of commit activity
    HTML 0 1 0 0 Updated Feb 3, 2025
  • bulk_RNAseq_course Public

    Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

    hds-sandbox/bulk_RNAseq_course’s past year of commit activity
    Shell 6 CC-BY-SA-4.0 4 0 0 Updated Jan 29, 2025
  • proteomics-sandbox Public

    A resource for biomedical students and researchers. Includes proteomics software tools like FragPipe, MaxQuant, PDV, SearchGUI, ThermoRawFileParser, and PeptideShaker. Offers a user-friendly interface, automated identification and quantification, comprehensive data analysis, and lightweight clone feature for optimized storage.

    hds-sandbox/proteomics-sandbox’s past year of commit activity
    HTML 9 2 0 0 Updated Jan 17, 2025
  • transcriptomics_app Public

    Development of the transcriptomics app based on Rstudio for UCloud

    hds-sandbox/transcriptomics_app’s past year of commit activity
    R 1 MIT 1 0 0 Updated Jan 8, 2025
  • bento-tools_development Public Forked from YeoLab/bento-tools

    A Python toolkit for subcellular analysis of spatial transcriptomics data

    hds-sandbox/bento-tools_development’s past year of commit activity
    Python 0 BSD-2-Clause 7 0 0 Updated Jan 5, 2025
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