Corrected doc ref error and added subfolders to summary saving

hed/tools/remodeling/operations/base_context.py

@@ -17,6 +17,9 @@ class BaseContext(ABC):
         context_filename (str)  Base filename for saving the context.
 
     """
+
+    INDIVIDUAL_SUMMARIES_PATH = 'individual_summaries'
+
     def __init__(self, context_type, context_name, context_filename):
         self.context_type = context_type
         self.context_name = context_name
@@ -113,16 +116,22 @@ def save(self, save_dir, file_formats=['.txt'], include_individual=True, separat
             self._save_separate(save_dir, file_format, time_stamp, summary)
 
     def _save_separate(self, save_dir, file_format, time_stamp, summary):
-        file_name = os.path.realpath(os.path.join(save_dir, secure_filename(self.context_filename) + "_overall" +
+        this_save = os.path.join(save_dir, self.context_name + '/')
+        os.makedirs(os.path.realpath(this_save), exist_ok=True)
+        file_name = os.path.realpath(os.path.join(this_save, secure_filename(self.context_filename) + "_overall" +
                                                   time_stamp + file_format))
 
         with open(file_name, 'w') as text_file:
             text_file.write(summary["Dataset"])
-        individual = summary.get("Individual files", {})
+        individual= summary.get("Individual files", {})
+
         if not individual:
             return
+
+        individual_dir = os.path.join(this_save, self.INDIVIDUAL_SUMMARIES_PATH + '/')
+        os.makedirs(os.path.realpath(individual_dir), exist_ok=True)
         for name, sum_str in individual.items():
-            file_name = os.path.realpath(os.path.join(save_dir,
+            file_name = os.path.realpath(os.path.join(individual_dir,
                                                       self.context_filename + "_" + name + time_stamp + file_format))
             with open(file_name, 'w') as text_file:
                 text_file.write(sum_str)

tests/tools/remodeling/operations/test_base_context.py

@@ -7,11 +7,10 @@
 class TestContext(BaseContext):
 
     def __init__(self):
-        super().__init__("TestContext", "Test", "test_context")
+        super().__init__("TestContext", "test", "test_context")
         self.summary_dict["data1"] = "test data 1"
         self.summary_dict["data2"] = "test data 2"
 
-
     def _get_summary_details(self, include_individual=True):
         summary = {"name": self.context_name}
         if include_individual:
@@ -69,14 +68,23 @@ def test_save(self):
         file_list1 = os.listdir(self.summary_dir)
         self.assertFalse(file_list1)
         test1.save(self.summary_dir, include_individual=True, separate_files=True)
-        file_list2 = os.listdir(self.summary_dir)
-        self.assertEqual(len(file_list2), 3)
+        dir_full = os.path.realpath(os.path.join(self.summary_dir, test1.context_name + '/'))
+        file_list2 = os.listdir(dir_full)
+        self.assertEqual(len(file_list2), 2)
+        dir_ind = os.path.realpath(os.path.join(self.summary_dir, test1.context_name + '/',
+                                                "individual_summaries/"))
+        file_list3 = os.listdir(dir_ind)
+        self.assertEqual(len(file_list3), 2)
         test1.save(self.summary_dir, file_formats=['.json', '.tsv'], include_individual=False, separate_files=True)
-        file_list3 = os.listdir(self.summary_dir)
-        self.assertEqual(len(file_list3), 3+1)
+        file_list4 = os.listdir(dir_full)
+        self.assertEqual(len(file_list4), len(file_list2) + 1)
+        file_list5 = os.listdir(dir_ind)
+        self.assertEqual(len(file_list3), len(file_list5))
         test1.save(self.summary_dir, file_formats=['.json', '.tsv'], include_individual=True, separate_files=True)
-        file_list3 = os.listdir(self.summary_dir)
-        self.assertEqual(len(file_list3), 3+1+3)
+        file_list6 = os.listdir(dir_full)
+        self.assertEqual(len(file_list6), len(file_list4) + 1)
+        file_list7 = os.listdir(dir_ind)
+        self.assertEqual(len(file_list7), len(file_list5) + 2)
 
 
 if __name__ == '__main__':

tests/tools/remodeling/test_dispatcher.py

@@ -197,10 +197,10 @@ def test_save_context(self):
         dispatch1.save_context()
         self.assertTrue(os.path.exists(summary_path))
         file_list1 = os.listdir(summary_path)
-        self.assertEqual(len(file_list1), 4, "save_context creates correct number of summary files when run.")
+        self.assertEqual(len(file_list1), 2, "save_context creates correct number of summary files when run.")
         dispatch1.save_context(save_formats=[])
         file_list2 = os.listdir(summary_path)
-        self.assertEqual(len(file_list2), 4, "save_context must have a format to save")
+        self.assertEqual(len(file_list2), 2, "save_context must have a format to save")
 
     def test_get_context_summaries(self):
         with open(self.summarize_excerpt) as fp: