Mirror Repository and run GitHub CI at HZDR (#1032)

* Update ci worflow action

* Update codecov.yml

.github/PULL_REQUEST_TEMPLATE.md

@@ -50,6 +50,3 @@ my be illegible. It may be easiest to save the output of each to a file.
 
 #### Does this change modify the behaviour of other functions? If so, which?
 yes / no
-
-<!-- Remove this line for GPU Cluster tests. It will need an approval. --->
-skip ci

.github/workflows/ci_cpu.yml

@@ -10,11 +10,11 @@ jobs:
     - name: Mirror + trigger CI
       uses: SvanBoxel/gitlab-mirror-and-ci-action@master
       with:
-        args: "https://gitlab.jsc.fz-juelich.de/haf/heat"
+        args: "https://gitlab.hzdr.de/haf/heat"
       env:
         FORCE_PUSH: "true"
-        GITLAB_HOSTNAME: "gitlab.jsc.fz-juelich.de"
+        GITLAB_HOSTNAME: "gitlab.hzdr.de"
         GITLAB_USERNAME: ""
-        GITLAB_PASSWORD: ${{ secrets.GITLAB_TOKEN }}
-        GITLAB_PROJECT_ID: "4935"
+        GITLAB_PASSWORD: ${{ secrets.GITLAB_TOKEN_1 }}
+        GITLAB_PROJECT_ID: "845"
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.gitlab-ci.yml

@@ -1,19 +1,29 @@
 test:
-  image: ubuntu:20.04
+  image: nvidia/cuda:11.6.2-runtime-ubuntu20.04
   tags:
-  - heat
+    - cuda
+    - x86_64
   script:
-  - apt update
-  - apt -y install build-essential python3-pip curl
-  - DEBIAN_FRONTEND=noninteractive apt -y install libopenmpi-dev openmpi-bin openmpi-doc
-  - apt -y install libhdf5-openmpi-dev libpnetcdf-dev
-  - pip install pytest coverage
-  - pip install .[hdf5,netcdf]
-  - COVERAGE_FILE=report/cov/coverage1 mpirun --allow-run-as-root -n 1 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report1.xml heat/
-  - COVERAGE_FILE=report/cov/coverage2 mpirun --allow-run-as-root -n 3 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report2.xml heat/
-  - COVERAGE_FILE=report/cov/coverage5 mpirun --allow-run-as-root -n 5 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report5.xml heat/
-  - COVERAGE_FILE=report/cov/coverage8 mpirun --allow-run-as-root -n 8 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report8.xml heat/
-  - coverage combine report/cov/*
-  - coverage report
-  - coverage xml
-  - curl -s https://codecov.io/bash | bash -s -- -c -F unit -f coverage.xml -t $CODECOV_TOKEN  || echo "Codecov failed to upload"
+    - apt update
+    - apt -y install build-essential python3-pip curl git
+    - DEBIAN_FRONTEND=noninteractive apt -y install libopenmpi-dev openmpi-bin openmpi-doc
+    - apt -y install libhdf5-openmpi-dev libpnetcdf-dev
+    - pip install pytest coverage
+    - pip3 install torch torchvision torchaudio --extra-index-url https://download.pytorch.org/whl/cu116
+    - pip install .[hdf5,netcdf]
+    - COVERAGE_FILE=report/cov/coverage1 HEAT_TEST_USE_DEVICE=cpu mpirun --allow-run-as-root -n 1 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report1.xml heat/
+    - COVERAGE_FILE=report/cov/coverage2 HEAT_TEST_USE_DEVICE=gpu mpirun --allow-run-as-root -n 3 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report3.xml heat/
+    - COVERAGE_FILE=report/cov/coverage5 HEAT_TEST_USE_DEVICE=cpu mpirun --allow-run-as-root -n 5 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report5.xml heat/
+    - COVERAGE_FILE=report/cov/coverage8 HEAT_TEST_USE_DEVICE=gpu mpirun --allow-run-as-root -n 6 coverage run --source=heat --parallel-mode -m pytest --junitxml=report/test/report6.xml heat/
+    - coverage combine report/cov/*
+    - coverage report
+    - coverage xml
+    - curl -Os https://uploader.codecov.io/latest/linux/codecov
+    - chmod +x codecov
+    - ./codecov -F unit -f ./coverage.xml -t $CODECOV_TOKEN -Z
+  artifacts:
+    when: always
+    paths:
+      - report/test/report*.xml
+    reports:
+      junit: report/test/report*.xml

README.md

@@ -8,7 +8,7 @@ Heat is a distributed tensor framework for high performance data analytics.
 
 Project Status
 --------------
-[![Mirror and run GitLab CI](https://github.com/helmholtz-analytics/heat/actions/workflows/ci_cpu.yml/badge.svg?branch=main)](https://github.com/helmholtz-analytics/heat/actions/workflows/ci_cpu.yml)
+[![Mirror and run GitLab CI](https://github.com/helmholtz-analytics/heat/actions/workflows/ci_cpu.yml/badge.svg)](https://github.com/helmholtz-analytics/heat/actions/workflows/ci_cpu.yml)
 [![Documentation Status](https://readthedocs.org/projects/heat/badge/?version=latest)](https://heat.readthedocs.io/en/latest/?badge=latest)
 [![codecov](https://codecov.io/gh/helmholtz-analytics/heat/branch/main/graph/badge.svg)](https://codecov.io/gh/helmholtz-analytics/heat)
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)

codecov.yml

@@ -13,28 +13,15 @@ coverage:
         # basic
         target: auto
         threshold: 3%
-        base: auto
         flags:
           - unit
         paths:
           - "heat"
-       # advanced settings
-        branches:
-          - main
-        if_ci_failed: error #success, failure, error, ignore
-        informational: false
-        only_pulls: false
     patch:
       default:
         # basic
         target: auto
         threshold: 3%
-        base: auto
-        # advanced
-        branches:
-          - main
-        if_ci_failed: error #success, failure, error, ignore
-        only_pulls: false
         flags:
           - "unit"
         paths:

setup.py

@@ -33,7 +33,7 @@
     install_requires=[
         "mpi4py>=3.0.0",
         "numpy>=1.13.0",
-        "torch>=1.7.0, <=1.12.1",
+        "torch>=1.7.0, <1.13",
         "scipy>=0.14.0",
         "pillow>=6.0.0",
         "torchvision>=0.8.0",