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Features/343 qr #429

Merged
merged 202 commits into from
Mar 6, 2020
Merged

Features/343 qr #429

merged 202 commits into from
Mar 6, 2020

Commits on Jul 23, 2019

  1. added qr function (empty), switching branches...

    coquelin77 committed Jul 23, 2019
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Commits on Jul 25, 2019

  1. switching branches

    coquelin77 committed Jul 25, 2019
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Commits on Jul 29, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Jul 29, 2019
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Commits on Aug 6, 2019

  1. added larft outline

    coquelin77 committed Aug 6, 2019
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Commits on Aug 7, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Aug 7, 2019
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Commits on Aug 13, 2019

  1. implemented R for qr for split=1

    coquelin77 committed Aug 13, 2019
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  2. Merge branch 'bug/assorted_bug_fixes_0' into features/343-QR

    coquelin77 committed Aug 13, 2019
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Commits on Aug 15, 2019

  1. added support for split=0 matrices to qr

    coquelin77 committed Aug 15, 2019
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Commits on Aug 16, 2019

  1. added jit to c_block_setter function, + old school qr

    coquelin77 committed Aug 16, 2019
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  2. fixed bug in eye 

    setting loop would sometimes try to set elements which were beyond the shape given
simple fix was try except, possible cleaner fix with different logic but this should suffice
    coquelin77 committed Aug 16, 2019
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  3. modified matmul to use torch constructors, and added raise in setitem

    coquelin77 committed Aug 16, 2019
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Commits on Aug 27, 2019

  1. added options to chunk to allow for local chunking

    coquelin77 committed Aug 27, 2019
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  2. block QR is too slow. implementing suCAQR or something similar 

    outline of qr working. need to implement:
- remainder handling in binary reduction step
- bug in multiple tile/process code (not working)
- ATM this is only split=0
    coquelin77 committed Aug 27, 2019
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Commits on Aug 29, 2019

  1. split 0 case working for a symetric matrix with other specific parame… 

    …ters, merging from master
    coquelin77 committed Aug 29, 2019
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  2. Merge branch 'master' into features/343-QR

    coquelin77 committed Aug 29, 2019
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Commits on Aug 30, 2019

  1. R calculation working as expected for square and mostly square matrices

    coquelin77 committed Aug 30, 2019
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  2. R calculation working as expected for square and mostly square matrices

    coquelin77 committed Aug 30, 2019
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Commits on Sep 2, 2019

  1. working on modifying the tiling scheme, need to switch branches

    coquelin77 committed Sep 2, 2019
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Commits on Sep 3, 2019

  1. completed update of tiling scheme for split 0, in process of implemen… 

    …tation of Q calculation
    coquelin77 committed Sep 3, 2019
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Commits on Sep 9, 2019

  1. switching branches

    coquelin77 committed Sep 9, 2019
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  2. Merge branch 'master' into features/343-QR

    coquelin77 committed Sep 9, 2019
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Commits on Sep 10, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Sep 10, 2019
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  2. switching branches, added some q logic

    coquelin77 committed Sep 10, 2019
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Commits on Sep 11, 2019

  1. added slicing dict for local columns

    coquelin77 committed Sep 11, 2019
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Commits on Sep 12, 2019

  1. improvements on the q_slices

    coquelin77 committed Sep 12, 2019
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  2. issue in setting the 0,rank block, need to switch branches

    coquelin77 committed Sep 12, 2019
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Commits on Sep 13, 2019

  1. rewrote local q merge into blocks

    coquelin77 committed Sep 13, 2019
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Commits on Sep 16, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Sep 16, 2019
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Commits on Sep 24, 2019

  1. added basic tiling for qr, still requires improvements for other algos

    coquelin77 committed Sep 24, 2019
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  2. working on getitem, going to fix bug

    coquelin77 committed Sep 24, 2019
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Commits on Sep 25, 2019

  1. rewrote tiling scheme for squares along diag

    coquelin77 committed Sep 25, 2019
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Commits on Sep 26, 2019

  1. added split=1 support (basic) to qr tiles

    coquelin77 committed Sep 26, 2019
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  2. Merge branch 'master' into features/343-QR and added both_vec flag to… 

    … matmul
    coquelin77 committed Sep 26, 2019
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  3. added setitem, start_stop, and tile size

    coquelin77 committed Sep 26, 2019
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Commits on Sep 27, 2019

  1. added async get/set, unhappy with async set...

    coquelin77 committed Sep 27, 2019
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  2. changed tiling to work with indices instead of sizes

    coquelin77 committed Sep 27, 2019
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  3. updating QR, need a lot of work to get tiling running

    coquelin77 committed Sep 27, 2019
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  4. async_get now return the tile on the home process

    coquelin77 committed Sep 27, 2019
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  5. Merge branch 'master' into features/343-QR

    coquelin77 committed Sep 27, 2019
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  6. added todo for local_get_async function

    coquelin77 committed Sep 27, 2019
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Commits on Oct 10, 2019

  1. added async get and local set, updating qr with tiles now

    coquelin77 committed Oct 10, 2019
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  2. updating qr to use tiling

    coquelin77 committed Oct 10, 2019
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  3. typo in lshape map

    coquelin77 committed Oct 10, 2019
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Commits on Oct 11, 2019

  1. new qr running with tiles for R calc

    coquelin77 committed Oct 11, 2019
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  2. cleaning, R calc tested up to 5000x5000, np 6, 10 tiles/row, split=0

    coquelin77 committed Oct 11, 2019
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  3. formatting changes

    coquelin77 committed Oct 11, 2019
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  4. Merge branch 'master' into features/343-QR

    coquelin77 committed Oct 11, 2019
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Commits on Oct 14, 2019

  1. updated to torch 1.3, breaking changes need addressing

    coquelin77 committed Oct 14, 2019
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  2. Merge branch 'master' into features/343-QR

    coquelin77 committed Oct 14, 2019
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  3. added function to copy the tiling of A for the Q matrix

    coquelin77 committed Oct 14, 2019
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Commits on Oct 15, 2019

  1. working on tsqr merge

    coquelin77 committed Oct 15, 2019
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Commits on Oct 18, 2019

  1. added send in binary tree merge QR to send data to diagonal process

    coquelin77 committed Oct 18, 2019
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  2. added dictionary updates for the caqr dict. the caqr matrix is done 

    need to multiply with local merged q, then distribute between processes
    coquelin77 committed Oct 18, 2019
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  3. Merge branch 'master' into features/343-QR

    coquelin77 committed Oct 18, 2019
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Commits on Oct 22, 2019

  1. single column Q generation working, multi column next

    coquelin77 committed Oct 22, 2019
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  2. changing q to be split0 for first then split1 for rest

    coquelin77 committed Oct 22, 2019
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  3. Merge branch 'master' into features/343-QR

    coquelin77 committed Oct 22, 2019
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Commits on Oct 23, 2019

  1. cleaned up getitem

    coquelin77 committed Oct 23, 2019
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Commits on Oct 25, 2019

  1. searching for seg fault for large matrices

    coquelin77 committed Oct 25, 2019
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Commits on Nov 7, 2019

  1. all working for small matrices; abstracted q calc, needs cleaning 

    large matrices are not working locally, up to 250x250 (split=0)
working exactly as expected. possible local MPI problem

large amount of cleaning required
    coquelin77 committed Nov 7, 2019
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  2. switching branches, debugging

    coquelin77 committed Nov 7, 2019
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Commits on Nov 8, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Nov 8, 2019
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  2. QR working for split=0

    coquelin77 committed Nov 8, 2019
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  3. refactoring names for qr functions

    coquelin77 committed Nov 8, 2019
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  4. removing some dead code in tiling

    coquelin77 committed Nov 8, 2019
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  5. minor cosmetic changings in qr

    coquelin77 committed Nov 8, 2019
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Commits on Nov 12, 2019

  1. wokring on qr split=1

    coquelin77 committed Nov 12, 2019
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Commits on Nov 13, 2019

  1. split=1 R calc working

    coquelin77 committed Nov 13, 2019
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  2. fixed bug in local set/get

    coquelin77 committed Nov 13, 2019
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  3. Merge branch 'master' into features/343-QR

    coquelin77 committed Nov 13, 2019
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Commits on Nov 14, 2019

  1. split1 Q requires an addition to the match tiles in tiling

    coquelin77 committed Nov 14, 2019
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  2. adding new case in match tiles

    coquelin77 committed Nov 14, 2019
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Commits on Nov 18, 2019

  1. modifing match tiles with split0 and split1

    coquelin77 committed Nov 18, 2019
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Commits on Nov 19, 2019

  1. working on tile matching, switching braches

    coquelin77 committed Nov 19, 2019
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  2. switching branches

    coquelin77 committed Nov 19, 2019
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Commits on Nov 20, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Nov 20, 2019
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  2. fixed match tiles, adding q calc to split=1

    coquelin77 committed Nov 20, 2019
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  3. Merge branch 'master' into features/343-QR

    coquelin77 committed Nov 20, 2019
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Commits on Nov 21, 2019

  1. split1 working, todo: abstraction, testing, docs, cleaning

    coquelin77 committed Nov 21, 2019
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  2. removed dead functions, cleaning init

    coquelin77 committed Nov 21, 2019
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Commits on Nov 22, 2019

  1. formatting and doc updates

    coquelin77 committed Nov 22, 2019
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  2. reformatting

    coquelin77 committed Nov 22, 2019
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Commits on Nov 25, 2019

  1. working on corner cases, need to merge master

    coquelin77 committed Nov 25, 2019
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Commits on Nov 26, 2019

  1. added redistribute function using balance

    coquelin77 committed Nov 26, 2019
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  2. fixed match tiles for split0 matching split1

    coquelin77 committed Nov 26, 2019
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  3. changed split1 case to use the correct number of columns for all case… 

    …s (hopefully)
    coquelin77 committed Nov 26, 2019
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Commits on Dec 2, 2019

  1. corrected bug for odd matrix sizes in split=0, still failing at (100,… 

    … 50) -np 3
    coquelin77 committed Dec 2, 2019
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  2. Fixed 1 tile/pr w/ split=0, initial tests working, full status awaiti… 

    …ng full tests
    coquelin77 committed Dec 2, 2019
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Commits on Dec 3, 2019

  1. removing dead code

    coquelin77 committed Dec 3, 2019
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  2. abstracted c_block_setter from matmul, doc updates + reorganizing QRs… 

    …plit0
    coquelin77 committed Dec 3, 2019
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  3. cleaning qr split0, doc updates, function adjustments to get closer t… 

    …o standards
    coquelin77 committed Dec 3, 2019
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  4. cleaning qr split0, doc updates, function adjustments to get closer t… 

    …o standards
    coquelin77 committed Dec 3, 2019
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  5. updating docs, removing redundencies

    coquelin77 committed Dec 3, 2019
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Commits on Dec 5, 2019

  1. added create_lshape_map, modifed redistributed

    coquelin77 committed Dec 5, 2019
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  2. doc updates, cleaning, etc.

    coquelin77 committed Dec 5, 2019
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Commits on Dec 6, 2019

  1. doc updates

    coquelin77 committed Dec 6, 2019
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  2. added dtyping to QR

    coquelin77 committed Dec 6, 2019
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  3. doc updates and reordering dndarray functions

    coquelin77 committed Dec 6, 2019
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  4. Merge branch 'master' into features/343-QR

    coquelin77 committed Dec 6, 2019
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  5. removed dead code, switching branches

    coquelin77 committed Dec 6, 2019
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  6. doc updates

    coquelin77 committed Dec 6, 2019
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  7. changed order of binary tree reduction for QRsplit0, fixed copy bug i… 

    …n matmul
    coquelin77 committed Dec 6, 2019
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  8. added qr tests

    coquelin77 committed Dec 6, 2019
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  9. raise tests, dims for qr == 2 fix

    coquelin77 committed Dec 6, 2019
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  10. changed logic for the lshape map

    coquelin77 committed Dec 6, 2019
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  11. Merge branch 'master' into features/343-QR

    coquelin77 committed Dec 6, 2019
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Commits on Dec 9, 2019

  1. adding tiling tests, splitting off redistribute as its own branch

    coquelin77 committed Dec 9, 2019
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  2. adding tests for props in tiles

    coquelin77 committed Dec 9, 2019
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  3. removed get tile size as it is unnecessary

    coquelin77 committed Dec 9, 2019
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  4. added setter and getter tests to tiling

    coquelin77 committed Dec 9, 2019
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  5. Merge branch 'master' into features/343-QR

    coquelin77 committed Dec 9, 2019
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  6. added tiling to __init__.py

    coquelin77 committed Dec 9, 2019
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  7. added comm reformatting

    coquelin77 committed Dec 9, 2019
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  8. made tiling tests only for distributed cases

    coquelin77 committed Dec 9, 2019
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  9. added allowances for 2 processes

    coquelin77 committed Dec 9, 2019
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  10. abstracted column creation to avoid code repitition

    coquelin77 committed Dec 9, 2019
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  11. more abstraction on column creation

    coquelin77 committed Dec 9, 2019
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  12. made create cols square diag a function, added docs

    coquelin77 committed Dec 9, 2019
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Commits on Dec 10, 2019

  1. added raise tests to increase coverage

    coquelin77 committed Dec 10, 2019
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  2. added split=None test to qr, removed redundent type tests

    coquelin77 committed Dec 10, 2019
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  3. missed a type argument which required removal

    coquelin77 committed Dec 10, 2019
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  4. added tiles property to DNDarray, moved item to proper place

    coquelin77 committed Dec 10, 2019
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  5. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Dec 10, 2019
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  6. removed qr_householder and larft

    coquelin77 committed Dec 10, 2019
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  7. Merge branch 'features/343-QR' of https://github.com/helmholtz-analyt… 

    …ics/heat into features/343-QR
    coquelin77 committed Dec 10, 2019
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  8. fixed split None qr test

    coquelin77 committed Dec 10, 2019
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  9. increasing coverage

    coquelin77 committed Dec 10, 2019
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  10. added type test for chunk

    coquelin77 committed Dec 10, 2019
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Commits on Dec 11, 2019

  1. commented out torch.jit for c block setter

    coquelin77 committed Dec 11, 2019
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  2. removed dead code

    coquelin77 committed Dec 11, 2019
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  3. removed dead code

    coquelin77 committed Dec 11, 2019
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  4. added clone to send for q_waits...bug in testing on hdfml

    coquelin77 committed Dec 11, 2019
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  5. changed isend to send and cut out pr0 (idle in function) from send_q_… 

    …to_diag_pr
    coquelin77 committed Dec 11, 2019
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Commits on Dec 12, 2019

  1. Merge branch 'bug/gpu_support' into features/343-QR

    coquelin77 committed Dec 12, 2019
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  2. added devices

    coquelin77 committed Dec 12, 2019
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  3. added divices for QR

    coquelin77 committed Dec 12, 2019
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  4. fixed device parameters in redistribute and tiling

    coquelin77 committed Dec 12, 2019
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  5. updating device + pr adjustments

    coquelin77 committed Dec 12, 2019
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  6. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Dec 12, 2019
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  7. added device param to qr tests

    coquelin77 committed Dec 12, 2019
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  8. Merge branch 'features/343-QR' of https://github.com/helmholtz-analyt… 

    …ics/heat into features/343-QR
    coquelin77 committed Dec 12, 2019
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  9. more device calls

    coquelin77 committed Dec 12, 2019
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  10. more device additions

    coquelin77 committed Dec 12, 2019
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  11. removed extra device param

    coquelin77 committed Dec 12, 2019
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  12. more device addition

    coquelin77 committed Dec 12, 2019
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  13. devices...

    coquelin77 committed Dec 12, 2019
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  14. devices....

    coquelin77 committed Dec 12, 2019
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  15. Merge branch 'master' into features/343-QR

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    coquelin77 authored Dec 12, 2019
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Commits on Dec 13, 2019

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Dec 13, 2019
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Commits on Dec 15, 2019

  1. doc updates, added DNDarray.create_square_diag_tiles

    coquelin77 committed Dec 15, 2019
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Commits on Dec 18, 2019

  1. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Dec 18, 2019
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  2. added tiling and tests from QR branch

    coquelin77 committed Dec 18, 2019
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  3. added local chunking

    coquelin77 committed Dec 18, 2019
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  4. added tiling to init

    coquelin77 committed Dec 18, 2019
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  5. chunk:changed self.rank to rank

    coquelin77 committed Dec 18, 2019
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  6. added property tiles to dndarray, added creation for SquareDiagTiles … 

    …for self.__tiles
    coquelin77 committed Dec 18, 2019
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  7. added setting of __tiles to tests

    coquelin77 committed Dec 18, 2019
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  8. removed match tiles added for QR and tested there

    coquelin77 committed Dec 18, 2019
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  9. added tests for local_get

    coquelin77 committed Dec 18, 2019
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Commits on Dec 21, 2019

  1. Merge branch 'master' into features/343-QR-tiling

    @coquelin77
    coquelin77 authored Dec 21, 2019
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  2. Merge branch 'master' into features/343-QR

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    coquelin77 authored Dec 21, 2019
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Commits on Jan 14, 2020

  1. updating structure of QR for better use in SVD

    coquelin77 committed Jan 14, 2020
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Commits on Jan 15, 2020

  1. bug fix + abstraction adjustments for SVD implementation 

    bug: if a node had no data then it would cause the code to fail,
fix: to keep communication on all processes but only calculate on active processes
    coquelin77 committed Jan 15, 2020
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  2. Merge branch 'master' into features/343-QR

    coquelin77 committed Jan 15, 2020
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  3. Merge branch 'master' into features/343-QR-tiling

    coquelin77 committed Jan 15, 2020
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  4. updated tiling with fix from qr branch for empty rows in split=0

    coquelin77 committed Jan 15, 2020
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  5. removed paranthesis on torch decive call

    coquelin77 committed Jan 15, 2020
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  6. removed match tiles command, not needed here

    coquelin77 committed Jan 15, 2020
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  7. added get_slice function for global slicing

    coquelin77 committed Jan 15, 2020
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  8. cleaning and organizing QR function

    coquelin77 committed Jan 15, 2020
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  9. removed get_slice function (unnecessary)

    coquelin77 committed Jan 15, 2020
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Commits on Jan 16, 2020

  1. corrected waiting loop for q_dict in split0

    coquelin77 committed Jan 16, 2020
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  2. corrected waiting loop for q_dict in split0

    coquelin77 committed Jan 16, 2020
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  3. doc updates

    coquelin77 committed Jan 16, 2020
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  4. updates to getitem (rearranged if elif else loop)

    coquelin77 committed Jan 16, 2020
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  5. merged with 343-qr-tiling

    coquelin77 committed Jan 16, 2020
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  6. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Jan 16, 2020
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  7. Merge branch 'master' into features/343-QR-tiling

    @coquelin77
    coquelin77 authored Jan 16, 2020
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  8. Merge branch 'master' into features/343-QR-tiling

    @coquelin77
    coquelin77 authored Jan 16, 2020
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  9. Merge branch 'master' into features/343-QR

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    coquelin77 authored Jan 16, 2020
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Commits on Jan 20, 2020

  1. abstracted if loop logic into static methods in init

    coquelin77 committed Jan 20, 2020
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  2. merged tiling with tiling branch

    coquelin77 committed Jan 20, 2020
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  3. Merge branch 'features/343-QR-tiling' into features/343-QR

    coquelin77 committed Jan 20, 2020
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  4. Merge branch 'master' into features/343-QR

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    coquelin77 authored Jan 20, 2020
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Commits on Jan 24, 2020

  1. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Jan 24, 2020
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Commits on Jan 30, 2020

  1. Merge branch 'master' into features/343-QR

    coquelin77 committed Jan 30, 2020
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Commits on Jan 31, 2020

  1. updated changelog with entry for the tiles

    coquelin77 committed Jan 31, 2020
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Commits on Feb 17, 2020

  1. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Feb 17, 2020
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  2. added extended tests for qr, WARNING: will GREATLY extend time for te… 

    …sting
    coquelin77 committed Feb 17, 2020
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  3. re-formatting of QR function, now slightly more streamlined

    coquelin77 committed Feb 17, 2020
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  4. moved split is None before numerical split calcs

    coquelin77 committed Feb 17, 2020
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  5. missing array call on R for split=None

    coquelin77 committed Feb 17, 2020
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Commits on Feb 19, 2020

  1. added torch jitter

    coquelin77 committed Feb 19, 2020
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  2. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Feb 19, 2020
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  3. split extended tests for better visibility during testing

    coquelin77 committed Feb 19, 2020
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  4. Merge branch 'features/343-QR' of https://github.com/helmholtz-analyt… 

    …ics/heat into features/343-QR
    coquelin77 committed Feb 19, 2020
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  5. added catch in split0 q calculation if a processes in inactive

    coquelin77 committed Feb 19, 2020
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  6. fixed bug in the creation of the tiles rows of R for the case that m > n

    coquelin77 committed Feb 19, 2020
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  7. changed order of tests to have them pass on 8 GPUs

    Daniel Coquelin committed Feb 19, 2020
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Commits on Feb 20, 2020

  1. pre-commit fixes

    coquelin77 committed Feb 20, 2020
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  2. added warning for extended tests warning user about length of extende… 

    …d tests
    coquelin77 committed Feb 20, 2020
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Commits on Mar 3, 2020

  1. Merge branch 'master' into features/343-QR

    @coquelin77
    coquelin77 authored Mar 3, 2020
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