.gitignore

### DATASETS
/datasets/
/logs/
/outputs/
/model_inference_config.json
## Results and Models
result/
Tests/logs
Tests/ML/models/logs
saved_models/
Tests/ML/test_data/outputs
Tests/ML/test_data/cxr_test_dataset
azureml-models
# Tests
junit
### MAC FOLDER
__MACOSX/

### PYTHON
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

# C extensions
*.so

# Distribution / packaging
.Python
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST
packages-microsoft-prod.deb

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
.hypothesis/
.pytest_cache/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# other
.vscode/
.devcontainer/

/InnerEye/ML/src/aml_config
*.exe
*.suo
.idea/inspectionProfiles/profiles_settings.xml
.idea/misc.xml
.idea/mypy.xml
.idea/workspace.xml
.idea/deployment.xml
InnerEyeTestVariables.txt
InnerEyePrivateSettings.yml
Tests/ML/test_outputs
/test_outputs
/run_outputs
/.vs/VSWorkspaceState.json
/.vs/slnx.sqlite
/.vs/ProjectSettings.json
/.idea/dictionaries
/.idea/pylint.xml
# Temp file that is generated if setup.py is run locally
/package_version.txt
# Test output from model registration
/TestsOutsidePackage/azureml-models
# This file contains the run recovery ID of the most recent job
most_recent_run.txt
# The default folder that contains downloaded Tensorboard files
tensorboard_runs

# InnerEye-DataQuality
InnerEye-DataQuality/cifar-10-python.tar.gz
InnerEye-DataQuality/name_stats_scoring.png
InnerEye-DataQuality/cifar-10-batches-py
InnerEye-DataQuality/logs
InnerEye-DataQuality/data

!**/InnerEye/ML/Histopathology/datasets