scEC-T-seq

Data analysis code

This repository contains the data analysis of the paper Chamorro González et al. 2023 https://www.nature.com/articles/s41588-023-01386-y

Project structure

• Structural variants analysis
• Gene fusion analysis
• ecDNA Reconstruction
• Microhomology analysis
• scCircle-seq QC
• ecDNA co-ocurrence
• Genome-wide DNA circularization
• Mitochondrial DNA analysis
• Circular DNA size and number
• Visualization of single cell coverage in single cells on ecDNA

Raw data

Associated sequencing data have been deposited on the European Genome-Phenome Archive under EGAS00001007026.

License

This code is distributed under the MIT License. Consult the accompanying LICENSE file for more details.