Multidimensional image viewer for MicroManager (MdV)

A prototype web app for viewing multidimensional images from MicroManager microscopy software.

Getting Started

1. Use a Python script (backend/gen_csv.py) to generate thumbnails and metadata.

2. Edit datasets variable in backend/gen_csv.py to define data sets.

3. Run backend/gen_csv.py, and it will generate: 1. Data set entries in datasets.csv file. 1. Metadata of each data set in metadata folder. 1. images in images folder.

4. The web interface, written with React, uses static JSON files and image thumbnails.

The server side just needs to serve static files. For example, run the following in the folder of index.html.

python -m SimpleHTTPServer 3000

Then just open http://localhost:3000/ in a web browser.

License

MIT license.