COVID-DRDB is created by the HIVDB team of Stanford University. It includes resistance data of SARS-CoV-2 for convalescent plasma, vaccinee plasma and monoclonal antibodies collected from published peer-reviewed/pre-print studies. The database also provides meta-data including but not limited to:
- MAb targets, classes, epitopes
- Vaccine types, developers, efficacy
- Reference/article titles, DOIs, URLs
- Mutation references (Wuhan-Hu-1, NC_045512.2)
The access to DRDB database is open to the public. An end user can access this database and summarize data via the web interface. This interface is open source at repository hivdb/chiro-frontend.
A SQLite dump file is created (almost) daily and can be retrieved from Release
page of this repository.
Raw CSV data are available in this repository folder
tables.
The code to validate the raw CSV data and generate SQLite dump file is also open source on GitHub: hivdb/covid-drdb.
Any contributions are welcome here. Currently, we accept new study suggestions, new data pull requests, feature requests, and bug/error reports. We are still working on providing a pull-request pipeline for outside contributors to add data into our database directly.
- New study suggestions
- Feature requests:
- Database, adding new tables, new columns, etc.
- Website (https://covdb.stanford.edu/search-drdb/)
- Bug/error reports:
We accept data submission by using Github pull requests. You can submit your data or you can work on the studies in the issue page. You can fork the repository, extract data, format the data into each table, then create a pull request to the main repository. We will regularly check pull requests, make comments, and merge them into main branch.
For more details, please read the wiki page about how we curate the database.