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Chromosome grid
Peter Kerpedjiev edited this page Mar 22, 2017
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1 revision
The chromosome grid can be overlayed on top of heatmaps to show where the 1-based chromosome boundaries are.
Example configuration
{
'type': '2d-chromosome-grid',
'position': 'center',
'chromInfoPath': "//s3.amazonaws.com/pkerp/data/hg19/chromSizes.tsv",
}
The property chromInfoPath
should be a link to a file which contains the chromosome sizes:
chr1 249250621
chr2 243199373
chr3 198022430
...
- Adding a new track
- Resizing a view
- Adding and removing views
- Replacing tracks
- Changing a heatmap's colormap
- Adding track labels
- Adding new views
- Closing views
- View synchronization
- View linking
- Syncing and linking
- Exporting and sharing