{lang} [foss/2016b] MXNet/0.9.3 (REVIEW) #4346
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The extensions have been bumped to latest version and some added for MXNet. All extensions which require X, mesa, cairo, ... are commented out.
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Test report by @wpoely86 |
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Test report by @wpoely86 |
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Test report by @wpoely86 |
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Test report by @wpoely86 |
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Test report by @wpoely86 |
This was referenced Mar 17, 2017
wpoely86
changed the title
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/212124073 only showing partial log for 1st failed test suite run 4029.1
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* origin/develop: (235 commits) add checksum for ViennaRNA 2.3.5 source tarball adding easyconfigs: ViennaRNA-2.3.5-intel-2017a.eb add toyplot extension in ipyrad easyconfig file add patch file for configparser as extension in IPython easyconfig adding easyconfigs: ipyrad-0.6.15-intel-2017a-Python-2.7.13.eb, h5py-2.7.0-intel-2017a-Python-2.7.13.eb, pkgconfig-1.2.2-intel-2017a-Python-2.7.13.eb, pkg-config-0.29.2-GCCcore-6.3.0.eb adding easyconfigs: IPython-5.3.0-intel-2017a-Python-2.7.13.eb Change source_urls of pycrypto to https://pypi.python.org/packages/source/p/pycrypto/: A crypto library should be downloaded via https, python.org seems more reliable than dlitz.net, dlitz.net is currently not online. re-add nbconvert extension in IPython easyconfigs add patch to avoid configparser declaring ownership of backports namespace, fixes easybuilders#3825 adding easyconfigs: GSL-2.3-intel-2017a.eb adding easyconfigs: PyZMQ-16.0.2-intel-2017a-Python-2.7.13-zmq4.eb, ZeroMQ-4.2.2-intel-2017a.eb, OpenPGM-5.2.122-intel-2017a.eb, libsodium-1.0.12-intel-2017a.eb adding easyconfigs: numba-0.32.0-intel-2017a-Python-2.7.13.eb install libiconv with GCCcore rather than intel toolchain adding easyconfigs: libiconv-1.15-intel-2017a.eb v6.0 adding easyconfigs: g2lib-1.4.0-intel-2017a.eb, g2clib-1.6.0-intel-2017a.eb adding easyconfigs: HDF-4.2.12-intel-2017a.eb adding easyconfigs: UDUNITS-2.2.24-intel-2017a.eb adding easyconfigs: cURL-7.54.0-GCCcore-6.3.0.eb adding easyconfigs: makedepend-1.0.5-GCCcore-6.3.0.eb, xorg-macros-1.19.1-GCCcore-6.3.0.eb, xproto-7.0.31-GCCcore-6.3.0.eb ...
The same commit id is found in both the nnvm repo and the mxnet repo...
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/229884903 Only showing partial log for 1st failed test suite run 4503.1;
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* origin/develop: (155 commits)
adding easyconfigs: EasyBuild-3.2.1.eb
(re-)bump to v3.3.0.dev0
bump version to v3.2.1 and massage release notes
{tools}[intel/2016b] imbalanced-learn 0.2.1 /w Python 2.7.12 (REVIEW)
add update date for extensions in R-bundle-Bioconductor 3.5 easyconfig
fix update date for extensions in R 3.4.0 easyconfig
prepare release notes for eb321
adding easyconfigs: R-bundle-Bioconductor-3.5-intel-2017a-R-3.4.0.eb
add missing patch files for kohoner/imager extensions in R v3.4.0
adding easyconfigs: R-3.4.0-intel-2017a-X11-20170314.eb
adding easyconfigs: goolfc-2017.01.eb
blank line between deps & builddeps
use 'data' as moduleclass
EasyConfig for BioKanga v4.3.6
clean up commented out lines in BLASR & blasr_libcpp easyconfigs, no need to use cstd=c++11 for BLASR
adding easyconfigs: RAxML-8.2.10-intel-2017a-hybrid-avx2.eb
adding easyconfigs: scikit-learn-0.18.1-intel-2017a-Python-3.6.1.eb, matplotlib-2.0.1-intel-2017a-Python-3.6.1.eb
adding easyconfigs: pandas-0.20.1-intel-2017a-Python-3.6.1.eb
adding easyconfigs: pyenchant-1.6.8-intel-2017a-Python-2.7.13.eb, enchant-1.6.1-intel-2017a.eb, hunspell-1.6.1-intel-2017a.eb
adding easyconfigs: pbdagcon-20170330-intel-2017a.eb, BLASR-20170330-intel-2017a.eb, blasr_libcpp-20170426-intel-2017a.eb, pbbam-20170508-intel-2017a.eb, HTSlib-20160107-intel-2017a-PacBio.eb, HDF5-1.8.18-intel-2017a-serial.eb
...
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/231692213 Only showing partial log for 1st failed test suite run 4606.1;
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@wpoely86 Missing dependencies, please open a separate PR for these? |
boegel
reviewed
May 24, 2017
| 'tools', | ||
| 'utils', | ||
| # non-standard libraries, should be specified with fixed versions! | ||
| # the commented-out extensions need either X, cairo or mesa |
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@wpoely86 What's the point of adding an extra R easyconfig with the same list of extensions as the existing R-3.3.3-foss-2016b-X11-20160819.eb, where a couple ones are commented out because X11 & co are not included as dependencies?
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Well, that one got added later based on this one.
* origin/develop: (45 commits) add missing patch for configparser add tuneR, seewave, soundecology extensions for R 3.4.0 (+ libsndfile as dep) adding easyconfigs: Spyder-3.1.4-intel-2017a-Python-2.7.13.eb, PyQt5-5.8.2-intel-2017a-Python-2.7.13.eb, SIP-4.19.2-intel-2017a-Python-2.7.13.eb add patch for BLAST+ 2.6.0 (based on patch provided in easybuilders#4195) add patch for AUGUSTUS adding easyconfigs: BUSCO-2.0.1-intel-2017a-Python-2.7.13.eb, AUGUSTUS-3.2.3-intel-2017a-Python-2.7.13.eb, BLAST+-2.6.0-intel-2017a-Python-2.7.13.eb, EMBOSS-6.6.0-intel-2017a.eb, lpsolve-5.5.2.5-intel-2017a.eb, libharu-2.3.0-intel-2017a.eb get list of added/modified files using 'git diff --name-only' in Travis config Sync Py3 and Py2 easyconfigs of Keras Switch default backend to Theano for keras Keras/2.0.4 for Python 2.7.13 adding easyconfigs: Octave-4.2.1-intel-2017a.eb, arpack-ng-3.5.0-intel-2017a.eb, FLTK-1.3.4-intel-2017a.eb, GLPK-4.61-intel-2017a.eb, GL2PS-1.4.0-intel-2017a.eb, Qhull-2015.2-intel-2017a.eb, qrupdate-1.1.2-intel-2017a.eb, GraphicsMagick-1.3.25-intel-2017a.eb, freeglut-3.0.0-intel-2017a.eb, gperf-3.0.4-intel-2017a.eb, xprop-1.2.2-intel-2017a.eb adding easyconfigs: gnuplot-5.0.6-intel-2017a.eb, Pango-1.40.5-intel-2017a.eb, libgd-2.2.4-intel-2017a.eb, libcerf-1.5-intel-2017a.eb, HarfBuzz-1.3.1-intel-2017a.eb, GObject-Introspection-1.52.0-intel-2017a.eb fix typo in statsmodels source url (/sources/ -> /source/) adding easyconfigs: statsmodels-0.8.0-intel-2017a-Python-2.7.13.eb adding easyconfigs: scikit-learn-0.18.1-intel-2017a-Python-2.7.13.eb, matplotlib-2.0.2-intel-2017a-Python-2.7.13.eb adding easyconfigs: gmpy2-2.0.8-intel-2017a-Python-2.7.13.eb, MPC-1.0.3-intel-2017a.eb added mummer patch adding easyconfigs: MUMmer-4.0.0beta-goolf-1.7.20.eb add FFmpeg easyconfig with support to x265 and LAME use 'git diff --name-only' and $TRAVIS_COMMIT_RANGE in Travis config to get list of changed files ...
boegel
requested changes
May 24, 2017
| @@ -7,7 +7,7 @@ description = """SWIG is a software development tool that connects programs writ | |||
| a variety of high-level programming languages.""" | |||
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| toolchain = {'name': 'intel', 'version': '2017a'} | |||
| toolchainopts = {'pic': True} | |||
| toolchainopts = {'pic': True, 'opt': True, 'optarch': True} | |||
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@wpoely86 these are enabled by default, no point in adding them?
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sorry, wrong file added. Too many files in my repo
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/235771189 Only showing partial log for 1st failed test suite run 4750.1;
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/235795591 Only showing partial log for 1st failed test suite run 4751.1;
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Test report by @wpoely86 |
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/236102495 Only showing partial log for 1st failed test suite run 4753.1;
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/236291561 Only showing partial log for 1st failed test suite run 4754.1;
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/236321075 Only showing partial log for 1st failed test suite run 4755.1;
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/236344638 Only showing partial log for 1st failed test suite run 4756.1;
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Test report by @wpoely86 |
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Travis test report: 8/8 runs failed - see https://travis-ci.org/hpcugent/easybuild-easyconfigs/builds/236459760 Only showing partial log for 1st failed test suite run 4759.1;
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Test report by @wpoely86 |
boegel
requested changes
Jun 22, 2017
| easyblock = 'ConfigureMake' | ||
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| name = 'FFmpeg' | ||
| version = '3.3' |
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There's already an easyconfig for 3.3.1, why roll back to an older version?
Right now, there's a 3.3.2 available already too...
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Because it wasn't there when I made this stuff some weeks ago...
I'm not going to keep track on all of this.
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| configopts = '--enable-pic --enable-shared --enable-gpl --enable-version3 --enable-nonfree --cc="$CC" --cxx="$CXX" ' | ||
| configopts += '--enable-libx264' |
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existing FFmpeg easyconfigs also include --enable-libx265 --enable-libmp3lame
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@wpoely86 If only the Just fleshing out the MXNet easyconfig is enough imho, you can leave in the others using |
wpoely86
added a commit
to wpoely86/easybuild-easyconfigs
that referenced
this pull request
Jun 22, 2017
The foss one works, the intel one currently doesn't.
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@wpoely86, this PR is being closed for the following reason(s): no activity for > 1 year. |
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Needs easybuilders/easybuild-easyblocks#1135
cc @hajgato