Bioinformatics pipelines used in the paper "The vertical transfer of maternal immune cells promotes neonatal immunity against viral infections."

Methylome analysis (MeDIP-Seq)

Scripts for MeDIP-Seq analyses are under the directory methylome.

Methylome datasets processed with the scripts are publicly available under https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE151725 (Accession numbers: GSM4589122-GSM4589133).

Microbiome analysis (16S rRNA gene sequencing)

Scripts for analyses of the gut microbiome (16S) of Rag2-/-γc-/-171 and wild-type mothers and their respective MMc+ and MMclow offspring are under the directory microbiome.

Microbiome datasets processed with the scripts are publicly available under https://www.ncbi.nlm.nih.gov/bioproject/PRJNA726533 and https://www.ncbi.nlm.nih.gov/sra/?term=SRP318008 (Accession numbers SRR14369765-SRR14369817).