v3.5.4

• Adds soft_assaytype to the document so we no longer have to call the ingest-api from portal-ui or portal-visualization.
• Tries to get the pipeline from the pipeline-shorthand instead of depending on regex.

Full Changelog: v3.5.3...v3.5.4

v3.5.3

• Exclude fields from public indices based on entity-api schema yaml
• Use the latest submodule v1.0.38

Full Changelog: v3.5.2...v3.5.3

v3.5.2

• Explicitly map segment_id to keyword
• Update requests (with submodule) and portal-visualization with dependency fixes

Full Changelog: v3.5.1...v3.5.2

v3.5.1

New full reindex workflow:

• create separate new indices and fill them with documents
• go-live to swap the running indices to the new ones in real time
• catch-up with configurable parameter for the maximum number of entities expected to be re-indexed

Full Changelog: v3.5.0...v3.5.1

v3.5.0

• Remove unnecessary fields under ancestors, descendants, immediate_ancestors, and immediate_descendants per each index group
• Updates portal translation to add processing_type for EPICs based on their expected creation_action.
• Update submodule ref and add CONSORTIUM_ID in config
• Fully remove deprecated GET /assaytype, POST /assayname, and GET /assaytype/<name> endpoints
• Update commons to 2.1.18
• Update to the latest search-adaptor to support search query logging based on configuration

Full Changelog: v3.4.9...v3.5.0

v3.4.9

New docker base image

Full Changelog: v3.4.8...v3.4.9

v3.4.8

• Add immediate_ancestor_ids/immediate_descendant_ids to the entity to enable migrating away from directly using immediate_ancestors and immediate_descendants.
• Parameter search documentation updates
• Add jupyter notebook param search example

Full Changelog: v3.4.7...v3.4.8

v3.4.7

• Full reindex scripting feature to support blue/green deployment, first round of creating flush indices and fill in documents. The catch-up and index-swap implementations to be continued.
• Update to commons 2.1.18 due to the search-adaptor dependency update for SenNet standardized group names, not affecting HuBMAP.
• Update to the latest search-adaptor to include reindex-all bug fix and limit parameterized searching to 500 results

Full Changelog: v3.4.6...v3.4.7

v3.4.6

• Change of S3 Object prefix for consistency with other repositories writing to the same S3 Bucket.
• Update to hubmap-commons==2.1.16

Full Changelog: v3.4.5...v3.4.6

v3.4.5

Flask v3 updates

Full Changelog: v3.4.4...v3.4.5