R package that streamlines & extends the popular R/Bioconductor package limma.
On Windows, you should have Rtools.
Install ezlimma from GitHub using remotes within R. You must install remotes, e.g. with install.packages("remotes"), if you haven't before. ezlimma depends on limma so you must also install this using instruction below if you haven't before.
#if haven't already installed limma
install.packages("BiocManager") #if haven't already installed BiocManager
library(BiocManager)
BiocManager::install("limma")
library(remotes)
remotes::install_github(repo="jdreyf/ezlimma", build_opts = c("--no-resave-data", "--no-manual"))
The vignette presents a tutorial. To see the vignette:
library(limma)
library(ezlimma)
library(rmarkdown)
browseVignettes(package="ezlimma")
and click on HTML.