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Interactive apps #78

Merged
merged 51 commits into from
Jan 25, 2024
Merged

Interactive apps #78

merged 51 commits into from
Jan 25, 2024

Commits on Aug 25, 2023

  1. Endpoint to upload a file to a completed job

    @sverhoeven
    sverhoeven committed Aug 25, 2023
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Commits on Sep 4, 2023

  1. Add /api/job/{jobid}/tinyapp/rescore endpoint

    @sverhoeven
    sverhoeven committed Sep 4, 2023
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Commits on Sep 5, 2023

  1. Added /api/job/{jobid}/interactive/{application} endpoints from confi… 

    …g file.
    @sverhoeven
    sverhoeven committed Sep 5, 2023
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  2. Revert "Endpoint to upload a file to a completed job" 

    This reverts commit 4eae4e1.
    @sverhoeven
    sverhoeven committed Sep 5, 2023
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  3. Add Interactive applications to docs

    @sverhoeven
    sverhoeven committed Sep 5, 2023
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  4. Add missing import

    @sverhoeven
    sverhoeven committed Sep 5, 2023
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  5. Add jobid to inter app get endpoints

    @sverhoeven
    sverhoeven committed Sep 5, 2023
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Commits on Sep 6, 2023

  1. Escape newlines in command + stringify all command args 

    Otherwise quoting fails
    @sverhoeven
    sverhoeven committed Sep 6, 2023
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Commits on Oct 3, 2023

  1. Add haddock3-re subcommands as interactive apps

    @sverhoeven
    sverhoeven committed Oct 3, 2023
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  2. Make linters happy

    @sverhoeven
    sverhoeven committed Oct 3, 2023
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Commits on Oct 9, 2023

  1. Add re

    @sverhoeven
    sverhoeven committed Oct 9, 2023
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  2. Remove newline escape 

    Got error:
usage: haddock3-re [-h] {score,clustrmsd,clustfcc} ...\nhaddock3-re: error: unrecognized arguments: 0.1  output/11_clustfcc/\n'
    @sverhoeven
    sverhoeven committed Oct 9, 2023
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Commits on Oct 12, 2023

  1. Comment out config section that does not work yet

    @sverhoeven
    sverhoeven committed Oct 12, 2023
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  2. Lower jsonschema version to be compat with poetry

    @sverhoeven
    sverhoeven committed Oct 12, 2023
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Commits on Oct 13, 2023

  1. Persist database in a Docker volume

    @sverhoeven
    sverhoeven committed Oct 13, 2023
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Commits on Nov 3, 2023

  1. Sync with cli args fraction 2 fraction_cutoff

    @sverhoeven
    sverhoeven committed Nov 3, 2023
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  2. Catchup to changed arguments of haddock3-re

    @sverhoeven
    sverhoeven committed Nov 3, 2023
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  3. Regenerate poetry.lock

    @sverhoeven
    sverhoeven committed Nov 3, 2023
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Commits on Nov 13, 2023

  1. Use Jinja2 template in interactive app command

    @sverhoeven
    sverhoeven committed Nov 13, 2023
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Commits on Nov 14, 2023

  1. Lost a $

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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  2. Use emptier default for generate-token subcommand.

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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  3. More docs + embedded files + restrict on application of job + more tests

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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  4. Make Python 3.10 minimal version + fix rtd

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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  5. Upgrade other ci to py310 + update sphinx autoapi

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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  6. Making CI green

    @sverhoeven
    sverhoeven committed Nov 14, 2023
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Commits on Nov 15, 2023

  1. Better english

    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  2. Bump to fastapi 0.99.0 + remove docs assets 

    Fixes #11
    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  3. Validate command template during startup

    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  4. Rename command to command_template + Rename input to `input_sch… 

    …ema` + more validation on startup
    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  5. Add q filter when validating command template during startup + add sk… 

    …ipped test for nested files
    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  6. Fix config examples

    @sverhoeven
    sverhoeven committed Nov 15, 2023
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  7. One more rename

    @sverhoeven
    sverhoeven committed Nov 15, 2023
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Commits on Jan 9, 2024

  1. During startup rewrite openapi spec so applications and interactive a… 

    …pplications are static routes.
    @sverhoeven
    sverhoeven committed Jan 9, 2024
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  2. Trying to get openapi-generator to understand upload

    @sverhoeven
    sverhoeven committed Jan 9, 2024
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  3. openapi generator is very picky. 

    upload should be typed as blob, but changes locally elsewhere cause it to become any|null.
Which is invalid client code.

To fix had to make sure routes with fileresponse have correct response content type.

TODO
- When extra application is added then generated client has any|null type for last app.
    @sverhoeven
    sverhoeven committed Jan 9, 2024
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Commits on Jan 10, 2024

  1. Give nice operation ids to apps + jobid is number

    @sverhoeven
    sverhoeven committed Jan 10, 2024
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  2. Fix tests

    @sverhoeven
    sverhoeven committed Jan 10, 2024
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  3. Self review

    @sverhoeven
    sverhoeven committed Jan 10, 2024
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  4. Raise 503 when interactive application is started when load is above 1

    @sverhoeven
    sverhoeven committed Jan 10, 2024
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  5. More tests

    @sverhoeven
    sverhoeven committed Jan 10, 2024
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Commits on Jan 12, 2024

  1. Call analyse so report.html can be read by webapp

    @sverhoeven
    sverhoeven committed Jan 12, 2024
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Commits on Jan 15, 2024

  1. Add analyse to reclustfcc interactive app

    @sverhoeven
    sverhoeven committed Jan 15, 2024
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Commits on Jan 24, 2024

  1. Make application endpoints more like interactive endpoints

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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  2. Fix test

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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  3. Do validation of form in route handler

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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  4. Make upload_needs a list + more tests + updated docs

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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  5. No placeholders anymore

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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  6. Fix test

    @sverhoeven
    sverhoeven committed Jan 24, 2024
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Commits on Jan 25, 2024

  1. Set job dir in example + skipped test for non-string input

    @sverhoeven
    sverhoeven committed Jan 25, 2024
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  2. Be more explicit about input types

    @sverhoeven
    sverhoeven committed Jan 25, 2024
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  3. Merge pull request #81 from i-VRESSE/richer-application 

    Make application endpoints more like interactive endpoints
    @sverhoeven
    sverhoeven authored Jan 25, 2024
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