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riederd committed Jun 15, 2022
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6 changes: 3 additions & 3 deletions src/meRanGh.pl
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#
# meRanGh
#
# Copyright 2019 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
# Copyright 2022 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
MA 02110-1301, USA.
Copyright (C) 2016 D.Rieder
Copyright (C) 2022 D.Rieder
=head1 COPYRIGHT
Copyright (C) 2016 Dietmar Rieder. All Rights Reserved.
Copyright (C) 2022 Dietmar Rieder. All Rights Reserved.
=head1 AUTHOR
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6 changes: 3 additions & 3 deletions src/meRanGs.pl
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#
# meRanGs
#
# Copyright 2019 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
# Copyright 2022 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
MA 02110-1301, USA.
Copyright (C) 2016 D.Rieder
Copyright (C) 2022 D.Rieder
=head1 COPYRIGHT
Copyright (C) 2016 Dietmar Rieder. All Rights Reserved.
Copyright (C) 2022 Dietmar Rieder. All Rights Reserved.
=head1 AUTHOR
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18 changes: 8 additions & 10 deletions src/meRanT.pl
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#
# meRanT.pl
#
# Copyright 2019 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
# Copyright 2022 Dietmar Rieder <dietmar.rieder@i-med.ac.at>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
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requires a transcript to gene mapping file (-i2g) "mm10.refSeqRNA2GeneName.map".
This mapping file must be in the following tab delimited format:
#seqID Genesymbol sequencelength
#seqID Genesymbol sequencelength
[...]
gi|568933834|ref|XR_376799.1| Mpv17 1474
gi|568933835|ref|XR_376800.1| Mpv17 1301
gi|568933836|ref|XR_376801.1| Mpv17 1840
gi|120444911|ref|NM_011960.2| Parg 4391
gi|58331157|ref|NM_017373.3| Nfil3 2019
gi|115298679|ref|NM_172673.3| Frmd5 4218
NR_046233.2 Rn45s 13400
NR_003279.1 Rn28s1 4730
NR_003280.2 Rs5-8s1 157
NM_134105.2 Txndc11 1233
[...]
Where each transcript in the transcript database (fasta) is mapped to a Genesymbol.
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Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
MA 02110-1301, USA.
Copyright (C) 2016 D.Rieder
Copyright (C) 2022 D.Rieder
=head1 COPYRIGHT
Copyright (C) 2016 Dietmar Rieder. All Rights Reserved.
Copyright (C) 2022 Dietmar Rieder. All Rights Reserved.
=head1 AUTHOR
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