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Releases: icgc-argo/sanger-wgs-variant-calling

2.1.0-9-1.3

25 Aug 20:23
@junjun-zhang junjun-zhang
2.1.0-9-1.3
1028f76
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2.1.0-9-1.3
  • update payload-gen-variant-calling which ensures vcf and tbi basename match

Note:

  1. compatible argo-metadata-schema versions: 0.4.0
  2. requires Nextflow 20.07.1 or higher
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2.1.0-9-1.2

25 Aug 20:23
@junjun-zhang junjun-zhang
2.1.0-9-1.2
5919e54
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2.1.0-9-1.2
  • enable DSL2: nextflow.preview.dsl = 2 to nextflow.enable.dsl = 2
  • update to SONG/SCORE utils 2.3.0
  • update to payload-gen-variant-calling 0.3.3.0

Note:

  1. compatible argo-metadata-schema versions: 0.4.0
  2. requires Nextflow 20.07.1 or higher
Assets 2
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2.1.0-9-1.1

25 Aug 20:23
@junjun-zhang junjun-zhang
2.1.0-9-1.1
b4ff79d
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2.1.0-9-1.1
  • update payload gen module to include session_id

Note: Note: compatible argo-metadata-schema versions: 0.4.0

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2.1.0-9-1.0

25 Aug 20:23
@junjun-zhang junjun-zhang
2.1.0-9-1.0
cb53c84
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2.1.0-9-1.0

ICGC-ARGO Sanger variant calling pipeine for Whole Genome Sequencing data. It calls SNV, small Indels, CNV and SV. The pipeline also produces supplement and QC metrics as tarballs.

  • Somatic SNVs called by CaVEMan
  • Somatic Indels called by Pindel
  • Somatic CNV called by ASCAT
  • Somatic SV called by BRASS

Note: compatible argo-metadata-schema versions: 0.3.0

Assets 2
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