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Releases: icgc-argo/sanger-wgs-variant-calling

2.1.0-9.6.0

25 Aug 20:24
3d4a43b
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  • compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  • requires Nextflow 20.10.0 or higher

sanger-wgs-variant-calling.v2.1.0-9.6.0

25 Aug 20:24
3d4a43b
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  • Release sanger-wgs-variant-calling.v2.1.0-9.6.0 (3d4a43b)
  • Package sanger-wgs-variant-calling.v2.1.0-9.6.0.tar.gz (sha256: a33d8e0089231ea2f4aeafe7018053f98fbb9552bc127ba0dfe4ce8a43e6abc2)
  • Package URI: github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.6.0

2.1.0-9.5.0

25 Aug 20:24
df5c060
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  • updated to use payload-gen-variant-callinng@0.5.0 with update to data_subtypes

Note:

  1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  2. requires Nextflow 20.07.1 or higher

sanger-wgs-variant-calling.v2.1.0-9.5.0

25 Aug 20:23
df5c060
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  • Release sanger-wgs-variant-calling.v2.1.0-9.5.0 (df5c060)
  • Package sanger-wgs-variant-calling.v2.1.0-9.5.0.tar.gz (sha256: 307cc95de15340268c203cdf8ca66a18e567567aef516f72fb929ce1b16f66c6)
  • Package URI: github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.5.0

2.1.0-9.4.0

25 Aug 20:23
e2f9eb8
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  • updated to use payload-gen-variant-callinng@0.4.0 that supports updated data category/type/subtype and analysis tools, and pass info.origin field from input analysis to generated payload

Note:

  1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  2. requires Nextflow 20.07.1 or higher

sanger-wgs-variant-calling.v2.1.0-9.4.0

25 Aug 20:23
e2f9eb8
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  • Release sanger-wgs-variant-calling.v2.1.0-9.4.0 (e2f9eb8)
  • Package sanger-wgs-variant-calling.v2.1.0-9.4.0.tar.gz (sha256: 70d5c5d8bf52248e148e0a8cb2dd17a9ae8eb4bfccd602c69f3cf1e0be3ec3a7)
  • Package URI: github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.4.0

2.1.0-9.3.0

25 Aug 20:23
1e95adb
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  • switched to use song-score-download@2.6.1 that supports retry on song/score temporary failures
  • switched to use song-score-upload@2.6.1 that supports retry on song/score temporary failures

Note:

  1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  2. requires Nextflow 20.07.1 or higher

sanger-wgs-variant-calling.v2.1.0-9.3.0

25 Aug 20:23
1e95adb
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  • Release sanger-wgs-variant-calling.v2.1.0-9.3.0 (1e95adb)
  • Package sanger-wgs-variant-calling.v2.1.0-9.3.0.tar.gz (sha256: be9fdfb371cd15fb7779e43a2a7792230b54a252b4a652ee2bc6be24428bc8af)
  • Package URI: github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.3.0

2.1.0-9.2.0

25 Aug 20:23
fda1871
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  • the Sanger WGS variant calling workflow has been converted to be a WFPM-compatible workflow package
  • now CI testing is done by GitHub Actions
  • added support for local mode in which data and metadata inputs are supplied directly by the user, instead of getting them from SONG/SCORE servers
  • added a dependent payload-add-uniform-ids@0.1.1 package to insert uniform IDs (DO/SP/SA) to user-provided SONG payload, a feature needed by the ARGO WGs for their benchmarking work
  • added test to cover the above new feature
  • switched to use helper-functions@1.0.0 for getting secondary files
  • switched to use cleanup-workdir@1.0.0 for cleaning up intermediate files upon workflow completion
  • updated payload-gen-variant-calling to 0.3.6.0 with publishDir mode set to copy
  • no change to any core algorithms

Note:

  1. compatible argo-metadata-schema versions: 0.4.0, 0.5.0
  2. requires Nextflow 20.07.1 or higher

sanger-wgs-variant-calling.v2.1.0-9.2.0

25 Aug 20:23
fda1871
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  • Release sanger-wgs-variant-calling.v2.1.0-9.2.0 (fda1871)
  • Package sanger-wgs-variant-calling.v2.1.0-9.2.0.tar.gz (sha256: 4c803ef02f2901a1f6a107808806242492d2d7cc5333b9d494b35a3c0cd4d92c)
  • Package URI: github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.2.0