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Releases: icgc-argo/sanger-wgs-variant-calling
Releases · icgc-argo/sanger-wgs-variant-calling
2.1.0-9.6.0
- updated to use payload-gen-variant-callinng@0.6.0
Note:
sanger-wgs-variant-calling.v2.1.0-9.6.0
- Release
sanger-wgs-variant-calling.v2.1.0-9.6.0
(3d4a43b) - Package
sanger-wgs-variant-calling.v2.1.0-9.6.0.tar.gz
(sha256:a33d8e0089231ea2f4aeafe7018053f98fbb9552bc127ba0dfe4ce8a43e6abc2
) - Package URI:
github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.6.0
2.1.0-9.5.0
- updated to use payload-gen-variant-callinng@0.5.0 with update to
data_subtypes
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
sanger-wgs-variant-calling.v2.1.0-9.5.0
- Release
sanger-wgs-variant-calling.v2.1.0-9.5.0
(df5c060) - Package
sanger-wgs-variant-calling.v2.1.0-9.5.0.tar.gz
(sha256:307cc95de15340268c203cdf8ca66a18e567567aef516f72fb929ce1b16f66c6
) - Package URI:
github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.5.0
2.1.0-9.4.0
- updated to use
payload-gen-variant-callinng@0.4.0
that supports updated data category/type/subtype and analysis tools, and passinfo.origin
field from input analysis to generated payload
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
sanger-wgs-variant-calling.v2.1.0-9.4.0
- Release
sanger-wgs-variant-calling.v2.1.0-9.4.0
(e2f9eb8) - Package
sanger-wgs-variant-calling.v2.1.0-9.4.0.tar.gz
(sha256:70d5c5d8bf52248e148e0a8cb2dd17a9ae8eb4bfccd602c69f3cf1e0be3ec3a7
) - Package URI:
github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.4.0
2.1.0-9.3.0
- switched to use
song-score-download@2.6.1
that supports retry on song/score temporary failures - switched to use
song-score-upload@2.6.1
that supports retry on song/score temporary failures
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
sanger-wgs-variant-calling.v2.1.0-9.3.0
- Release
sanger-wgs-variant-calling.v2.1.0-9.3.0
(1e95adb) - Package
sanger-wgs-variant-calling.v2.1.0-9.3.0.tar.gz
(sha256:be9fdfb371cd15fb7779e43a2a7792230b54a252b4a652ee2bc6be24428bc8af
) - Package URI:
github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.3.0
2.1.0-9.2.0
- the Sanger WGS variant calling workflow has been converted to be a WFPM-compatible workflow package
- now CI testing is done by GitHub Actions
- added support for
local
mode in which data and metadata inputs are supplied directly by the user, instead of getting them from SONG/SCORE servers - added a dependent
payload-add-uniform-ids@0.1.1
package to insert uniform IDs (DO/SP/SA) to user-provided SONG payload, a feature needed by the ARGO WGs for their benchmarking work - added test to cover the above new feature
- switched to use
helper-functions@1.0.0
for getting secondary files - switched to use
cleanup-workdir@1.0.0
for cleaning up intermediate files upon workflow completion - updated
payload-gen-variant-calling
to0.3.6.0
with publishDir mode set tocopy
- no change to any core algorithms
Note:
- compatible argo-metadata-schema versions: 0.4.0, 0.5.0
- requires Nextflow 20.07.1 or higher
sanger-wgs-variant-calling.v2.1.0-9.2.0
- Release
sanger-wgs-variant-calling.v2.1.0-9.2.0
(fda1871) - Package
sanger-wgs-variant-calling.v2.1.0-9.2.0.tar.gz
(sha256:4c803ef02f2901a1f6a107808806242492d2d7cc5333b9d494b35a3c0cd4d92c
) - Package URI:
github.com/icgc-argo/sanger-wgs-variant-calling/sanger-wgs-variant-calling@2.1.0-9.2.0