NOTE: this repository is archived to support workflow reproducibility. Active development continues at: https://github.com/icgc-argo-workflows/sanger-wxs-variant-calling
This repository maintains the Nextflow workflow code for Sanger WXS somatic variant calling. The underlying containerized variant calling tools include CaVEMan and Pindle, which are originated from https://github.com/cancerit/dockstore-cgpwxs.