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BUG: pin PyMC to old version #37

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Apr 10, 2023
Merged

BUG: pin PyMC to old version #37

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21 changes: 14 additions & 7 deletions README.rst
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Expand Up @@ -2,10 +2,6 @@
:target: https://travis-ci.org/ihmeuw/dismod_mr
:alt: Latest Version

============
Introduction
============

This project is the descriptive epidemiological meta-regression tool,
DisMod-MR, which grew out of the Global Burden of Disease (GBD) Study
2010. DisMod-MR has been developed for the Institute of Health
Expand All @@ -27,11 +23,11 @@ Dismod MR requires PyMC2 which does not play nicely with normal Python
installation tools. Fortunately, ``conda`` has solved this issue for us.
So first you'll need to setup a conda environment
(after `installing conda, if necessary <https://docs.conda.io/projects/conda/en/latest/user-guide/install/>`_)
and install ``pymc``. Then you can install ``dismod_mr`` using ``pip``.
and install ``pymc`` version ``2.3.8``. Then you can install ``dismod_mr`` using ``pip``.

.. code-block:: sh

conda create --name=dismod_mr python=3.6 pymc
conda create --name=dismod_mr python=3.6 pymc==2.3.8
conda activate dismod_mr
pip install dismod_mr

Expand Down Expand Up @@ -61,12 +57,23 @@ package index.

.. code-block:: sh

conda create --name=dismod_mr python=3.6 pymc
conda create --name=dismod_mr python=3.6 pymc==2.3.8
conda activate dismod_mr
git clone git@github.com:ihmeuw/dismod_mr.git
cd dismod_mr
pip install -e .

To test this, you can use ``pytest``, which you must first install.

.. code-block:: sh

pip install pytest
pytest

If you have things setup right, this will still generate many
warnings, but there should be no tests that produce failures or
errors.

Coding Practices
----------------

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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -18,7 +18,7 @@
install_requirements = [
'numpy>=1.7.1',
'scipy>=0.12.0',
'pymc>=2.3.6',
'pymc==2.3.8',
'networkx==2.3',
'pandas>=0.23.4,<1.1',
'numba==0.51.0',
Expand Down