Merge branch 'dev' of github.com:iiasa/ibis.iSDM into dev #295
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2-branch/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [master, dev] | |
| pull_request: | |
| branches: [master] | |
| workflow_dispatch: | |
| name: r-cmd-check | |
| jobs: | |
| r-cmd-check: | |
| if: "!contains(github.event.commits[0].message, '[skip-ci]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| - {os: windows-latest, r: 'release'} | |
| - {os: ubuntu-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| _R_REMOTES_NO_ERRORS_FROM_WARNINGS_: true | |
| _R_CHECK_TIMINGS_: 10 | |
| R_KEEP_PKG_SOURCE: yes | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| http-user-agent: ${{ matrix.config.http-user-agent }} | |
| use-public-rspm: true | |
| extra-repositories: "https://inla.r-inla-download.org/R/testing" | |
| - name: Install gdal and igraph dependencies on Linux (gdal) | |
| run: | | |
| if [ "$RUNNER_OS" == "Linux" ]; then | |
| sudo apt-get -y install \ | |
| libudunits2-dev libgdal-dev libgeos-dev libproj-dev libglpk-dev libglu1-mesa-dev | |
| elif [ "$RUNNER_OS" == "macOS" ]; then | |
| brew install --cask xquartz | |
| brew install pkg-config | |
| brew install gdal | |
| brew install proj | |
| brew install geos | |
| else | |
| echo "Nothing to do" | |
| fi | |
| shell: bash | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"all"' | |
| extra-packages: | | |
| any::rcmdcheck, | |
| any::glmnet, | |
| any::glmnetUtils, | |
| any::pdp, | |
| stan-dev/cmdstanr, | |
| ElliotDovers/scampr, | |
| any::igraph, | |
| any::lwgeom, | |
| any::ncmeta, | |
| any::xgboost, | |
| any::dbarts, | |
| any::mboost, | |
| any::inlabru, | |
| any::BoomSpikeSlab | |
| needs: check | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| with: | |
| args: 'c("--no-manual", "--as-cran", "--no-build-vignettes")' | |
| error-on: '"error"' | |
| upload-snapshots: true | |
| # - name: Show testthat output | |
| # if: always() | |
| # run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| # shell: bash | |
| # | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@main | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |