src/NGSDExportStudyGHGA/main.cpp: removed build warning and cleaned u… #3740
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| name: Windows build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: windows-latest | |
| defaults: | |
| run: | |
| shell: msys2 {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: msys2/setup-msys2@v2 | |
| with: | |
| msystem: MINGW64 | |
| update: true | |
| release: true | |
| install: git base-devel mingw-w64-x86_64-toolchain mingw-w64-x86_64-zlib mingw-w64-x86_64-bzip2 mingw-w64-x86_64-xz mingw-w64-x86_64-curl mingw-w64-x86_64-dlfcn mingw-w64-x86_64-qt5 mingw-w64-x86_64-libmariadbclient mingw-w64-x86_64-python mingw-w64-x86_64-python-numpy mingw-w64-x86_64-python-matplotlib mingw-w64-x86_64-python-packaging mingw-w64-x86_64-sqlite3 libsqlite libsqlite-devel unzip | |
| - name: Update submodules | |
| run: git submodule update --recursive --init | |
| - name: Unpack htslib | |
| working-directory: ./htslib | |
| run: unzip htslib_win_64.zip | |
| - name: Copy htslib to bin folder | |
| run: (cp htslib/lib/hts.dll.a bin/) && (cp htslib/lib/hts-3.dll bin/) && (cp htslib/lib/libhts.a bin/) | |
| - name: Download test files | |
| run: make download_test_files | |
| - name: Build other dependencies | |
| run: make build_libs_release build_tools_release build_gui_release | |
| - name: Create a settings.ini file for tests | |
| run: .github/workflows/settings_win_mac.sh | |
| shell: bash | |
| - name: Run tests | |
| run: make -k test_lib_windows test_tools_windows |