Code

Spde#29

Code

Merged

ThierryO merged 50 commits intomaininbo/n2kanalysis:mainfrom spdeinbo/n2kanalysis:spdeCopy head branch name to clipboardJan 30, 2025

+1,601-285

Commits

Commits on Sep 10, 2024

• add an Spde class

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• add spec2mesh()

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• add spec2matern()

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• add the n2kSpde class

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• add make_a()

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• add a method for fit_model() on an n2kSpde

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• bump package version

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Commits on Sep 11, 2024

• fix checklist issues

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• update checklist infrastructure

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• define missing suggested package

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Commits on Sep 12, 2024

• require latest version of multimput

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• fix documentation issues

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• add url to pkgdown

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Commits on Sep 19, 2024

• bugfix in fit_model() on n2kSpde

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• add moving_trend()

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• add moving_trend()

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• add moving_difference()

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Commits on Sep 22, 2024

• fit fit_model() on n2kManifest

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Commits on Oct 3, 2024

• add pkgdown url to DESCRIPTION

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Commits on Oct 8, 2024

• fit_model() on hurdleImput stores intermediate models

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• manifest_yaml_to_bash() creates the project and yaml subfolders when missing

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• fit_model() on n2kSpde with imputations returns an n2kSpde model

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Commits on Oct 9, 2024

• export order_manifest()

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Commits on Oct 27, 2024

• add get_datafield_id()

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• use base pipe in fit_model() on n2kComposite

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Commits on Oct 31, 2024

• use pak::pkg_install() instead of remotes::install_github() in Docker image

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Commits on Nov 1, 2024

• fit_model() on n2kManifest stores the status of processed analyses. Speeding up the analysis on aws S3

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Commits on Nov 6, 2024

• fit_model() on n2kManifest displays the progress

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Commits on Nov 8, 2024

• try to fit INLA model without control.family settings

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Commits on Nov 13, 2024

• add extract() method for n2kModelImputed

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• fit_model() on n2kHurdle handles the case when not all parent models are converged

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• fit_model() on n2kManifest() does not use a default for the local argument

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Commits on Dec 7, 2024

• fit_model() on n2kManifest displays the system time

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• fit_model) on n2kManifest displays the ETA

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Commits on Jan 21, 2025

• 📝 Fix spelling errors

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• ➕ Add missing dependency

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• 📝 Update citation

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• 📝 Moving_difference() gains a default value for first_year

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• 🚨 Fix alias for extract() on n2kModelImputed

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• 🚨 Reduce cyclomatic complexity of fit_model() on n2kInla()

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• 🧱 Add Rstudio project id

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• ✅ Fix unit tests on fit_model()

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• ➕ Import median() from stats

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• 📝 Document arguments of order_manifest()

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Commits on Jan 24, 2025

• ⬆️ Require git2rdata 0.5.0

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Commits on Jan 26, 2025

• ✅ Add unit test for n2k_spde()

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Commits on Jan 27, 2025

• ✅ Add unit test for get_datafield_id()

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Commits on Jan 29, 2025

• 💚 Pass missing environment variables to GHA

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Commits on Jan 30, 2025

• ✅ Add unit tests for get_result() on n2kManifest

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• ♻️ Improve manifest_yaml_to_bash()

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