74: closed form calculations for PWCsurvOS

[danielinteractive]

closes #74

[github-actions]

Code Coverage Summary

Filename                     Stmts    Miss  Cover    Missing
-------------------------  -------  ------  -------  ---------
R/assertions.R                  15       0  100.00%
R/corPFSOS.R                    95      19  80.00%   314-332
R/empSignificant.R              59       0  100.00%
R/estimateParams.R              80       0  100.00%
R/eventTracking.R               88       2  97.73%   48, 244
R/getClinicalTrials.R           71       0  100.00%
R/getSimulatedData.R           109       0  100.00%
R/getWaitTimeSum.R              29       2  93.10%   45, 48
R/hazardFunctions.R             26       0  100.00%
R/piecewiseDistribution.R       32       0  100.00%
R/piecewiseHazards.R            18       0  100.00%
R/survivalFunctions.R          152       0  100.00%
R/transitionParameters.R        42       0  100.00%
TOTAL                          816      23  97.18%

Diff against main

Filename                 Stmts    Miss  Cover
---------------------  -------  ------  --------
R/survivalFunctions.R      +41       0  +100.00%
TOTAL                      +41       0  +0.15%

Results for commit: 45e1544

Minimum allowed coverage is 80%

♻️ This comment has been updated with latest results

[github-actions]

Unit Tests Summary

    1 files    16 suites   2m 9s ⏱️
101 tests 100 ✔️ 1 💤 0 ❌
224 runs  223 ✔️ 1 💤 0 ❌

Results for commit 45e1544.

♻️ This comment has been updated with latest results.

[github-actions]

Unit Test Performance Difference

Test Suite	$Status$	Time on main	$±Time$	$±Tests$	$±Skipped$	$±Failures$	$±Errors$
getClinicalTrials	💚	$4.92$	$-2.15$	$0$	$0$	$0$	$0$
getSimulatedDataDistib	💚	$99.38$	$-4.06$	$0$	$0$	$0$	$0$

Additional test case details

Test Suite	$Status$	Time on main	$±Time$	Test Case
getClinicalTrials	💚	$3.58$	$-2.01$	getClinicalTrials_works_as_expected_and_generates_data_according_to_PWC
getSimulatedDataDistib	💚	$36.10$	$-2.58$	getSimulatedData_generates_distributions_as_expected_PW
getSimulatedDataDistib	💚	$51.49$	$-1.11$	getSimulatedData_generates_distributions_as_expected_Weibull
piecewiseHazards	💀	$0.01$	$-0.01$	getPCWHazard_works_as_expected
piecewiseHazards	👶		$+0.03$	getPWCHazard_works_as_expected
survivalFunctions	👶		$+0.01$	PWCsurvOS_does_not_return_values_larger_than_1
survivalFunctions	👶		$+0.03$	PWCsurvOS_gives_equal_results_as_the_numerical_integration
survivalFunctions	👶		$+0.05$	PWCsurvOS_is_monotonically_decreasing_and_not_larger_than_1

Results for commit b7199c0

♻️ This comment has been updated with latest results.

[holgstr]

@danielinteractive So cool that this works now, and you even wrote an extensive vignette ;) I just have a very minor suggestion for change in the vignette.