Cleanup

[oliche]

Some modules functions are removed

[k1o0]

Although the tests pass there are problems with the log. Each call to the ibllib logger leads to an exception about logging to a closed file. The handler in question is probably the one added by runAllTests. I jinx'd everything by saying I was happy with the CI server haha. The log is too big to load remotely so here's one of the errors:

--- Logging error ---
Traceback (most recent call last):
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/logging/__init__.py", line 1088, in emit
    stream.write(msg + self.terminator)
ValueError: I/O operation on closed file
Call stack:
  File "/home/experiment/anaconda3/envs/ci/bin/coverage", line 8, in <module>
    sys.exit(main())
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/site-packages/coverage/cmdline.py", line 943, in main
    status = CoverageScript().command_line(argv)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/site-packages/coverage/cmdline.py", line 659, in command_line
    return self.do_run(options, args)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/site-packages/coverage/cmdline.py", line 830, in do_run
    runner.run()
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/site-packages/coverage/execfile.py", line 199, in run
    exec(code, main_mod.__dict__)
  File "/home/experiment/Documents/github/ibllib-repo/../iblscripts/runAllTests.py", line 133, in <module>
    result, test_list = run_tests(dry_run=args.dry_run)
  File "/home/experiment/Documents/github/ibllib-repo/../iblscripts/runAllTests.py", line 88, in run_tests
    result = unittest.TextTestRunner(verbosity=2, stream=sys.stdout).run(ci_tests)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/runner.py", line 176, in run
    test(result)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 84, in __call__
    return self.run(*args, **kwds)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 122, in run
    test(result)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 84, in __call__
    return self.run(*args, **kwds)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 122, in run
    test(result)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 84, in __call__
    return self.run(*args, **kwds)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/suite.py", line 122, in run
    test(result)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/case.py", line 736, in __call__
    return self.run(*args, **kwds)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/case.py", line 676, in run
    self._callTestMethod(testMethod)
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/case.py", line 633, in _callTestMethod
    method()
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/unittest/mock.py", line 1325, in patched
    return func(*newargs, **newkeywargs)
  File "/home/experiment/Documents/github/iblscripts/ci/tests/test_camera_extraction.py", line 697, in test_ephys
    jobqc.run()
  File "/home/experiment/anaconda3/envs/ci/lib/python3.8/site-packages/ibllib/pipes/tasks.py", line 103, in run
    _logger.info(f"running ibllib version {ibllib.__version__}")
Message: 'running ibllib version 2.13.6'
Arguments: ()
--- Logging error ---

I'll re-trigger the tests and let's see if it was a one-time thing.