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26 Open 41 Closed
26 Open 41 Closed
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Issues list

phyloseq object does not work with psadd::plot_krona bug Something isn't working
#104 opened Nov 11, 2024 by pieterprovoost
Use UDB database for vsearch
#103 opened Nov 7, 2024 by pieterprovoost
@pieterprovoost
Remove special characters before taxon matching
#102 opened Nov 5, 2024 by pieterprovoost
Docker: configure strict channel priorities
#101 opened Nov 4, 2024 by pieterprovoost
@pieterprovoost
sampleSizeValue does not appear to match sum of reads per ASV bug Something isn't working
#96 opened Jun 26, 2024 by pieterprovoost
Create cleanup script
#95 opened Jun 6, 2024 by pieterprovoost
Ensure that original identification is preserved regardless of WoRMS match WoRMS matching
#92 opened Dec 15, 2023 by pieterprovoost
@pieterprovoost
Add citation
#91 opened Dec 7, 2023 by pieterprovoost
Improve occurrenceID naming
#89 opened Nov 16, 2023 by pieterprovoost
High level RDP classification despite good BLAST hits
#87 opened Nov 15, 2023 by pieterprovoost
Handle taxonomy strings from BLAST bug Something isn't working
#86 opened Nov 15, 2023 by pieterprovoost
Some DNADerivedData fields not exported bug Something isn't working
#85 opened Nov 14, 2023 by pieterprovoost
@pieterprovoost
Dada2_ASVInference_Single: object 'abundance' not found bug Something isn't working
#84 opened Nov 14, 2023 by pieterprovoost
Write tests for taxonomic annotation WoRMS matching
#83 opened Nov 14, 2023 by pieterprovoost
@pieterprovoost
Make results path configurable
#74 opened Jun 5, 2023 by pieterprovoost
Taxon matching stops silently with (429) Too Many Requests bug Something isn't working WoRMS matching
#73 opened Jun 2, 2023 by pieterprovoost
@pieterprovoost
1
Incomplete taxon matching bug Something isn't working WoRMS matching
#71 opened Jun 1, 2023 by pieterprovoost
@pieterprovoost
Remove nan values from occurrence table
#70 opened May 31, 2023 by pieterprovoost
Add instructions for downloading NCBI nt documentation Improvements or additions to documentation
#65 opened May 16, 2023 by pieterprovoost
blastn: Out of memory bug Something isn't working
#64 opened May 16, 2023 by pieterprovoost
@pieterprovoost
2
Incorrect taxonomy statistics in report bug Something isn't working dataset: rey
#58 opened Nov 14, 2022 by pieterprovoost
Report barcharts not readable in case of many samples bug Something isn't working
#56 opened Oct 24, 2022 by pieterprovoost
No sequences left after chimera removal? bug Something isn't working dataset: rey
#54 opened Oct 17, 2022 by pieterprovoost
Why is mergePairs with returnRejects = FALSE returning short (200) sequences? dataset: rey
#52 opened Oct 5, 2022 by pieterprovoost
@pieterprovoost
Anthomyiidae sp. BOLD_ACC9466 mapped to urn:lsid:marinespecies.org:taxname:1 bug Something isn't working WoRMS matching
#45 opened Sep 30, 2022 by pieterprovoost
ProTip! Exclude everything labeled bug with -label:bug.