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Update compliance-checker notebook with web API #37

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merged 4 commits into from
Sep 13, 2023
Merged

Update compliance-checker notebook with web API #37

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572cc95
Web API is broken ATM
ocefpaf Oct 19, 2021
5c4a024
remove the warning and update the URL
ocefpaf Jan 14, 2022
4f46c2e
use f-strings
ocefpaf Sep 13, 2023
96f20f8
update URL and CF check
ocefpaf Sep 13, 2023
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77 changes: 24 additions & 53 deletions ...ontent/code_gallery/data_management_notebooks/2017-05-14-running_compliance_checker.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -72,7 +72,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
"4.2.0+11.gd85b593\n"
"5.1.0\n"
]
}
],
Expand Down Expand Up @@ -104,10 +104,7 @@
"source": [
"# Path to the Scripps Pier Data.\n",
"\n",
"\n",
"# See https://github.com/Unidata/netcdf-c/issues/1299\n",
"# for the reason we need to append `#fillmismatch` to the URL.\n",
"url = \"http://data.ioos.us/thredds/dodsC/deployments/rutgers/ru29-20150623T1046/ru29-20150623T1046.nc3.nc#fillmismatch\""
"url = \"https://gliders.ioos.us/thredds/fileServer/deployments/rutgers/ru29-20150623T1046/ru29-20150623T1046.nc3.nc\""
]
},
{
Expand All @@ -131,7 +128,7 @@
"\n",
"return_value, errors = ComplianceChecker.run_checker(\n",
" ds_loc=url,\n",
" checker_names=[\"cf\", \"acdd\"],\n",
" checker_names=[\"cf:1.9\", \"acdd\"],\n",
" verbose=True,\n",
" criteria=\"normal\",\n",
" skip_checks=None,\n",
Expand All @@ -155,11 +152,13 @@
"\n",
"--------------------------------------------------------------------------------\n",
" IOOS Compliance Checker Report \n",
" Version 5.1.0 \n",
" Report generated 2023-09-13T13:58:44Z \n",
" acdd:1.3 \n",
"http://wiki.esipfed.org/index.php?title=Category:Attribute_Conventions_Dataset_Discovery\n",
"--------------------------------------------------------------------------------\n",
" Corrective Actions \n",
"ru29-20150623T1046.nc3.nc#fillmismatch has 11 potential issues\n",
"ru29-20150623T1046.nc3.nc has 11 potential issues\n",
"\n",
"\n",
" Highly Recommended \n",
Expand All @@ -168,29 +167,29 @@
"* Conventions does not contain 'ACDD-1.3'\n",
"\n",
"variable \"conductivity\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"density\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"platform_meta\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"* standard_name\n",
"\n",
"variable \"pressure\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"salinity\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"temperature\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"u\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"variable \"v\" missing the following attributes:\n",
"* coverage_content\n",
"* coverage_content_type\n",
"\n",
"\n",
" Recommended \n",
Expand All @@ -204,44 +203,6 @@
"\n",
"time_coverage_extents_match\n",
"* Failed to retrieve and convert times for variables time.\n",
"\n",
"\n",
"--------------------------------------------------------------------------------\n",
" IOOS Compliance Checker Report \n",
" cf:1.6 \n",
" http://cfconventions.org \n",
"--------------------------------------------------------------------------------\n",
" Corrective Actions \n",
"ru29-20150623T1046.nc3.nc#fillmismatch has 5 potential issues\n",
"\n",
"\n",
" Errors \n",
"--------------------------------------------------------------------------------\n",
"§3.4 Ancillary Data\n",
"* lat_qc is not a variable in this dataset\n",
"* lon_qc is not a variable in this dataset\n",
"\n",
"§3.5 Flags\n",
"* precise_lat_qc's flag_meanings and flag_values should have the same number of elements.\n",
"* precise_lon_qc's flag_meanings and flag_values should have the same number of elements.\n",
"\n",
"§5.6 Horizontal Coorindate Reference Systems, Grid Mappings, Projections\n",
"* longitude is not associated with a coordinate defining true latitude and sharing a subset of dimensions\n",
"* longitude is not associated with a coordinate defining true longitude and sharing a subset of dimensions\n",
"* latitude is not associated with a coordinate defining true latitude and sharing a subset of dimensions\n",
"* latitude is not associated with a coordinate defining true longitude and sharing a subset of dimensions\n",
"* time is not associated with a coordinate defining true latitude and sharing a subset of dimensions\n",
"* time is not associated with a coordinate defining true longitude and sharing a subset of dimensions\n",
"\n",
"§9.1 Features and feature types\n",
"* Different feature types discovered in this dataset: mapped-grid (u, v, time, longitude, latitude), trajectory-profile-incomplete (pressure, temperature, conductivity, salinity, density, platform_meta, depth)\n",
"\n",
"\n",
" Warnings \n",
"--------------------------------------------------------------------------------\n",
"§2.3 Naming Conventions\n",
"* attribute trajectory:_Encoding should begin with a letter and be composed of letters, digits, and underscores\n",
"* attribute wmo_id:_Encoding should begin with a letter and be composed of letters, digits, and underscores\n",
"\n"
]
}
Expand All @@ -262,7 +223,17 @@
}
],
"metadata": {
"_draft": {
"nbviewer_url": "https://gist.github.com/68144718926fb68097cfebcf8aab012a"
},
"anaconda-cloud": {},
"gist": {
"data": {
"description": "code_gallery/data_management_notebooks/2017-05-14-running_compliance_checker.ipynb",
"public": true
},
"id": "68144718926fb68097cfebcf8aab012a"
},
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
Expand Down
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