Merge pull request #169 from Toshihiko-tan/CAEN-FIX

Fixed the documentation of heatmap.R and lasagna_plots.R

R/heatmap.R

@@ -8,7 +8,7 @@
 #' @param clustering_distance_subjects the distance measure for subjects clustering, accepts same values as \code{\link{dist}}, default value is 'correlation' distance
 #' @param tz \strong{Default: "".} A character string specifying the time zone to be used. System-specific (see \code{\link{as.POSIXct}}), but " " is the current time zone, and "GMT" is UTC (Universal Time, Coordinated). Invalid values are most commonly treated as UTC, on some platforms with a warning.
 #'
-#' @return A heatmap of metrics by subjects generated via \code{\link{pheatmap}}
+#' @return A heatmap of metrics by subjects generated via \code{\link[pheatmap]{pheatmap}}
 #' @export
 #'
 #' @examples

R/lasagna_plots.R

@@ -2,7 +2,7 @@
 #'
 #' @inheritParams conga
 #' @param lasagnatype \strong{Default: "unsorted".} String corresponding to plot type, currently supported options are 'unsorted' for an unsorted single-subject lasagna plot, 'timesorted' for a lasagna plot with glucose values sorted within each time point across days, and 'daysorted' for a lasagna plot with glucose values sorted within each day across time points.
-#' @param limits The minimal and maximal glucose values for coloring grid which is gradient from blue (minimal) to red (maximal), see \code{\link{scale_fill_gradient2}})
+#' @param limits The minimal and maximal glucose values for coloring grid which is gradient from blue (minimal) to red (maximal), see \code{\link[ggplot2]{scale_fill_gradient2}})
 #' @param midpoint The glucose value serving as midpoint of the diverging gradient scale (see \code{\link{scale_fill_gradient2}}). The default value is 105 mg/dL. The values above are colored in red, and below in blue in the default color_scheme, which can be adjusted.
 #' @param dt0 The time frequency for interpolated aligned grid in minutes, the default will match the CGM meter's frequency (e.g. 5 min for Dexcom).
 #' @param inter_gap The maximum allowable gap (in minutes) for interpolation of